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[183959_at]

Description C49A9.2 /REP_DB=WormBase Gene ID /WP=CE16932 /TR=O44154 /GB=AAK29789.1 /SUBMIT=ST.LOUIS /CHR=4 /FEA=Sanger Annotation
Cluster 6grp_high1_10_10 > 94      4grp_high_8_8 > 22      6grp_total > 84      4grp_total > 16      6grp_high1_sub > In      6grp_total_sub > Hat      6grp_rule_based > S5      

Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 184
1 2 3 4 range
A 41.7
(-3)
A 		43.3
(-2.8)
A 		93.3
(2.6)
P 		96.7
(3)
P 		55
B 34.5
(-3)
M 		108.4
(-0.6)
P 		63.9
(-2)
A 		218.2
(3)
P 		184
C 70.1
(-0.9)
P 		46
(-3)
A 		85.4
(0.5)
P 		113.5
(3)
P 		68
avr 48.8
(-3) 		65.9
(-1.9) 		80.9
(-1) 		142.8
(3) 		94

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 145
1 2 3 4 5 6 range
A 62.8
(-3)
A 		72.6
(-2.5)
P 		117.8
(-0.2)
P 		114.6
(-0.3)
P 		179.6
(3)
P 		140.7
(1)
P 		117
B 39.2
(-3)
P 		74.1
(-1.6)
P 		157.4
(1.9)
P 		137.4
(1.1)
P 		184.1
(3)
P 		176.2
(2.7)
P 		145
C 47.2
(-3)
A 		66
(-1.9)
P 		91.7
(-0.5)
P 		152.1
(3)
P 		108.6
(0.5)
P 		100.2
(0)
P 		105
avr 49.7
(-3) 		70.9
(-1.8) 		122.3
(1) 		134.7
(1.7) 		157.4
(3) 		139
(2) 		108
No Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 37
1 2 3 4 range
A 15.2
(-0.7)
A 		9.4
(-3)
A 		24.4
(3)
P 		14.1
(-1.1)
P 		15
B 11
(-3)
M 		26.8
(-0.3)
P 		14.8
(-2.4)
A 		46.5
(3)
P 		36
C 23.2
(0.6)
P 		13.2
(-3)
A 		29.8
(3)
P 		19.1
(-0.9)
P 		17
avr 16.5
(-3) 		16.5
(-3) 		23
(0.9) 		26.6
(3) 		10

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 63
1 2 3 4 5 6 range
A 11.6
(-3)
A 		25.8
(-1)
P 		25.7
(-1)
P 		29.1
(-0.5)
P 		54.2
(3)
P 		34.2
(0.2)
P 		43
B 13.7
(-3)
P 		24.7
(-1.9)
P 		38.2
(-0.6)
P 		36.4
(-0.8)
P 		74.8
(3)
P 		65.7
(2.1)
P 		61
C 17.5
(-3)
A 		20.1
(-2.1)
P 		23.3
(-1)
P 		30.6
(1.5)
P 		35.1
(3)
P 		33.5
(2.5)
P 		18
avr 14.3
(-3) 		23.5
(-1.6) 		29.1
(-0.8) 		32
(-0.4) 		54.7
(3) 		44.5
(1.5) 		40
NetAffx Links Cluster Members
Consensus/Exemplar
GeneChip Array Information
Probe Set ID 183959_at
GeneChip Array C. elegans Genome Array
Organism Common Name Nematode
Probe Design Information
Transcript ID(Array Design) affy.Ce.10374
Sequence Type Exemplar sequence
Representative Public ID C49A9.2 NCBI
Target Description C49A9.2 /REP_DB=WormBase Gene ID /WP=CE16932 /TR=O44154 /GB=AAK29789.1 /SUBMIT=ST.LOUIS /CHR=4 /FEA=Sanger Annotation
Annotation Method Description
Annotation Description This probe set was annotated using the Matching Probes based pipeline to a RefSeq identifier using 1 transcript(s).
Annotation Grade This is a grade A annotation.
Annotation Transcript Cluster (# of Matching Probes) NM_068536(11)
Transcript Assignments
Representative
Transcript		 Description Matching Probes Related Probesets by Grade
NM_068536 NCBI Caenorhabditis elegans C49A9.2 (C49A9.2) mRNA, complete cds. 11/11 None
C49A9.2 ENSEMBL cdna:known chromosome:CEL140:IV:6225435:6228030:1 gene:C49A9.2 11/11 None
Annotation Notes
There are no noteworthy cross hybridizing mRNAs found for this probe set.
Genomic Alignment of Consensus/Exemplar Sequence
Assembly Wormbase March 2004
Alignment(s)
Position Identity Coverage Cytoband
chrIV:6225440-6227904(+) 100.0 100.0
Public Domain and Genome References
Gene Title
Ensembl C49A9.2
Entrez Gene 183593 Entrez gene
SwissProt O44154 EMBL-EBI
WormBase CE16932 Wormbase
Functional Annotations
Protein Similarities
Method ID Description E-Value
blast AAK29789 Hypothetical protein C49A9.2 [Caenorhabditis elegans] ref|NP_500937.1| C49A9.2 [Caenorhabditis elegans] 0.0
blast AAK29791 Hypothetical protein C49A9.3 [Caenorhabditis elegans] ref|NP_500936.2| C49A9.3 [Caenorhabditis elegans] 2.0E-85
blast CAB07267 Hypothetical protein M04C3.3 [Caenorhabditis elegans] ref|NP_507783.1| M04C3.3 [Caenorhabditis elegans] 3.0E-81
Protein Domains
Database ID Description E-Value
Pfam IPR004987 EMBL-EBI Protein of unknown function DUF272 6.5E-17
Pfam IPR004987 EMBL-EBI Protein of unknown function DUF272 8.0E-83
Sequence
Target Sequence 
>C. ELEGANS:183959_AT
cattcactactccaaccggaaaatttatttgttttgaagcaatccattttgaatcagcag
atgtacttagctcatctaatactaatacaactgaaaataagaaaaaagtgactgaaaaag
tgaaagaaaggggaattcgacgtcctcaagatccaaaatcaaaaggaatacaaagagccg
ttgttatacgggttatcgagaaagggaatagtacagattatattgtatggaatttggatt
cgaaaatggagtgcattttcagatctgcaaagcatgaactagaaagaggtcactttttct
ctggaaaatttgtgaaaaaatctgatggatctctgatgtgcaccaattatgttaaacaaa
ttaaaggatttgttgaaggtggtctggatgaacatgaaaatatatatttcaccgttccaa
ttcaaaactttcaagcggcaaggggaaatagaaagtacaattgcgcattttctgaat

BLASTn GenBank NR
Probe Info
Probe Sequence(5'-3') Probe X Probe Y Probe Interrogation
Position 		Strandedness
CATTCACTACTCCAACCGGAAAATT 502 215 1112 Antisense
GAAGCAATCCATTTTGAATCAGCAG 259 341 1147 Antisense
GAATCAGCAGATGTACTTAGCTCAT 384 327 1162 Antisense
AGCTCATCTAATACTAATACAACTG 600 79 1180 Antisense
GAAAGGGGAATTCGACGTCCTCAAG 666 359 1237 Antisense
TCGACGTCCTCAAGATCCAAAATCA 414 601 1248 Antisense
GAGCCGTTGTTATACGGGTTATCGA 532 281 1286 Antisense
GAGTGCATTTTCAGATCTGCAAAGC 620 399 1360 Antisense
GGATCTCTGATGTGCACCAATTATG 332 511 1438 Antisense
TATATATTTCACCGTTCCAATTCAA 606 661 1512 Antisense
AAGTACAATTGCGCATTTTCTGAAT 688 155 1564 Antisense
Sequence Source Affymetrix Proprietary Database