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[183958_s_at]

Description F43E2.7 /REP_DB=WormBase Gene ID /WP=CE10348 /TR=O02093 /GB=AAC71129.1 /SUBMIT=ST.LOUIS /CHR=2 /FEA=Sanger Annotation
Cluster 6grp_highest_10_10 > 37      6grp_high1_10_10 > 62      4grp_highest_8_8 > 24      4grp_high_8_8 > 51      6grp_highest_nonorm > 37      6grp_total > 63      4grp_total > 52      6grp_highest_sub > 03_04      6grp_high1_sub > 03      6grp_total_sub > Hat      6grp_rule_based > S3      4grp_rule_based > L2      

Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 2722
1 2 3 4 range
A 3988.5
(0.3)
P 		5123.3
(3)
P 		4288.7
(1)
P 		2566.1
(-3)
P 		2557
B 5195.6
(3)
P 		5179
(3)
P 		4933.3
(2.4)
P 		2592.4
(-3)
P 		2603
C 4741.9
(3)
P 		4689.7
(2.9)
P 		4362.3
(2)
P 		2473.6
(-3)
P 		2268
avr 4642
(2.1) 		4997.3
(3) 		4528.1
(1.9) 		2544
(-3) 		2453

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 3108
1 2 3 4 5 6 range
A 4158.2
(-3)
P 		5301.7
(0.5)
P 		6117.8
(3)
P 		5589.8
(1.4)
P 		5088.3
(-0.2)
P 		5205.5
(0.2)
P 		1960
B 3746.7
(-3)
P 		5267.8
(1.3)
P 		5879.3
(3)
P 		5640.6
(2.3)
P 		5038.1
(0.6)
P 		4693.4
(-0.3)
P 		2133
C 4187.2
(-3)
P 		4962.4
(-1.3)
P 		6854.6
(3)
P 		6658.9
(2.6)
P 		4888.7
(-1.4)
P 		4893.6
(-1.4)
P 		2667
avr 4030.7
(-3) 		5177.3
(0.1) 		6283.9
(3) 		5963.1
(2.1) 		5005
(-0.4) 		4930.8
(-0.6) 		2253
No Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 1281
1 2 3 4 range
A 1452.2
(3)
P 		1112.1
(1.1)
P 		1121.2
(1.2)
P 		375.6
(-3)
P 		1077
B 1656.8
(3)
P 		1279.1
(0.9)
P 		1143.2
(0.2)
P 		552.5
(-3)
P 		1104
C 1569.7
(3)
P 		1348.3
(1.8)
P 		1520.4
(2.7)
P 		417.1
(-3)
P 		1153
avr 1559.6
(3) 		1246.5
(1.3) 		1261.6
(1.4) 		448.4
(-3) 		1111

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 1280
1 2 3 4 5 6 range
A 766.5
(-3)
P 		1885.5
(3)
P 		1332.3
(0)
P 		1417.7
(0.5)
P 		1535.4
(1.1)
P 		1267.4
(-0.3)
P 		1119
B 1303.7
(-3)
P 		1753.4
(0.6)
P 		1427.7
(-2)
P 		1494
(-1.5)
P 		2046.9
(3)
P 		1750.2
(0.6)
P 		743
C 1552
(0.2)
P 		1514.2
(-0.4)
P 		1744.6
(3)
P 		1339.1
(-3)
P 		1581.9
(0.6)
P 		1638.2
(1.4)
P 		406
avr 1207.4
(-3) 		1717.7
(3) 		1501.5
(0.4) 		1416.9
(-0.6) 		1721.4
(3) 		1551.9
(1) 		514
NetAffx Links Cluster Members
Consensus/Exemplar
Group Members
GeneChip Array Information
Probe Set ID 183958_s_at
GeneChip Array C. elegans Genome Array
Organism Common Name Nematode
Probe Design Information
Transcript ID(Array Design) affy.Ce.5363
Sequence Type Exemplar sequence
Representative Public ID F43E2.7 NCBI
Target Description F43E2.7 /REP_DB=WormBase Gene ID /WP=CE10348 /TR=O02093 /GB=AAC71129.1 /SUBMIT=ST.LOUIS /CHR=2 /FEA=Sanger Annotation
Annotation Method Description
Annotation Description This probe set was annotated using the Matching Probes based pipeline to a RefSeq identifier using 1 transcript(s).
Annotation Grade This is a grade A annotation.
Annotation Transcript Cluster (# of Matching Probes) NM_182194(11), NM_063144(11)
Transcript Assignments
Representative
Transcript		 Description Matching Probes Related Probesets by Grade
NM_182194 NCBI Caenorhabditis elegans F43E2.7b (F43E2.7) mRNA, complete cds. 11/11 None
NM_063144 NCBI Caenorhabditis elegans F43E2.7a (F43E2.7) mRNA, complete cds. 11/11 None
SNAP00000044497 ENSEMBL cdna:SNAP chromosome:CEL140:II:7372831:7374095:-1 11/11 None
GENEFINDER00000044500 ENSEMBL cdna:GeneFinder chromosome:CEL140:II:7372831:7374095:-1 11/11 None
F43E2.7b ENSEMBL cdna:known chromosome:CEL140:II:7372540:7374075:-1 gene:F43E2.7 11/11 None
F43E2.7a ENSEMBL cdna:known chromosome:CEL140:II:7372831:7373796:-1 gene:F43E2.7 11/11 None
Annotation Notes
Cross Hybridizing mRNA Matched Probes Nature of Assignment Related Probesets by Grade
Genomic Alignment of Consensus/Exemplar Sequence
Assembly Wormbase March 2004
Alignment(s)
Position Identity Coverage Cytoband
chrII:7372827-7374092(-) 100.0 100.0
Public Domain and Genome References
Ensembl F43E2.7
Functional Annotations
Protein Similarities
Method ID Description E-Value
blast CAE67605 Hypothetical protein CBG13150 [Caenorhabditis briggsae] 1.0E-165
blast AAC71129 Hypothetical protein F43E2.7a [Caenorhabditis elegans] ref|NP_495545.2| F43E2.7a [Caenorhabditis elegans] 1.0E-153
blast AAC71129 Hypothetical protein F43E2.7a [Caenorhabditis elegans] ref|NP_495545.2| F43E2.7a [Caenorhabditis elegans] 1.0E-150
blast CAE67605 Hypothetical protein CBG13150 [Caenorhabditis briggsae] 1.0E-136
blast AAC71129 Hypothetical protein F43E2.7a [Caenorhabditis elegans] ref|NP_495545.2| F43E2.7a [Caenorhabditis elegans] 1.0E-31
blast AAN39675 Hypothetical protein F43E2.7b [Caenorhabditis elegans] ref|NP_871994.1| F43E2.7b [Caenorhabditis elegans] 1.0E-31
Sequence
Target Sequence 
>C. ELEGANS:183958_S_AT
attccgcgattctgtcattcgtgttgttgctgttactgctgcacgaccatttgctgtctg
ctttgctcgtcaagttgctcaagttattggcaatgaaactaaatacactacctgcgccca
ggctctggccgtcatcggaaagcaggaaggtccaggaggacttttcagcggacttgctcc
tcagatcgttggagagcttctcgtcatttggggagttcatctaattactcacggaattca
aagagctattctccgcattgaatttggagacacaaagaataaggacgaaacgaaagccaa
ggctgccaaggatgttcacaagttcatccatactgctgttccattcctcgtcaactcctt
cggctacccatacagtgttgtatccactgttatggctgttgctggatcaggactagccgt
ttcgttcctcccatattcaccatccttcaacaactggcatggagcatgggactaccttcg
cccaattggtctcaagcg

BLASTn GenBank NR
Probe Info
Probe Sequence(5'-3') Probe X Probe Y Probe Interrogation
Position 		Strandedness
ATTCCGCGATTCTGTCATTCGTGTT 278 9 453 Antisense
TGTTGTTGCTGTTACTGCTGCACGA 466 563 474 Antisense
TGCTTTGCTCGTCAAGTTGCTCAAG 663 579 511 Antisense
CCAGGAGGACTTTTCAGCGGACTTG 104 271 604 Antisense
GGACTTGCTCCTCAGATCGTTGGAG 441 525 622 Antisense
GAGAGCTTCTCGTCATTTGGGGAGT 606 393 644 Antisense
ACAAGTTCATCCATACTGCTGTTCC 142 115 770 Antisense
TGGATCAGGACTAGCCGTTTCGTTC 89 549 855 Antisense
CATATTCACCATCCTTCAACAACTG 299 215 884 Antisense
GCATGGAGCATGGGACTACCTTCGC 581 309 909 Antisense
ACCTTCGCCCAATTGGTCTCAAGCG 252 83 926 Antisense
Sequence Source Affymetrix Proprietary Database