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[183956_at]

Description C48E7.1 /REP_DB=WormBase Gene ID /WP=CE08816 /TR=O02082 /GB=AAK21358.1 /SUBMIT=ST.LOUIS /CHR=1 /FEA=Sanger Annotation
Cluster 6grp_highest_10_10 > 21      6grp_high1_10_10 > 05      4grp_highest_8_8 > 08      4grp_high_8_8 > 52      6grp_highest_nonorm > 02      6grp_total > 14      4grp_total > 59      6grp_highest_sub > De      6grp_high1_sub > De      6grp_total_sub > Decrease      6grp_rule_based > S1      4grp_rule_based > L2      

Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 2266
1 2 3 4 range
A 1471.9
(1.1)
P 		2089.3
(3)
P 		1840.4
(2.2)
P 		189.5
(-3)
P 		1900
B 1297.6
(0.7)
P 		2024.2
(3)
P 		1849.8
(2.4)
P 		139.2
(-3)
P 		1885
C 1398.5
(0.4)
P 		2376.5
(3)
P 		1915
(1.8)
P 		110.1
(-3)
P 		2266
avr 1389.3
(0.7) 		2163.3
(3) 		1868.4
(2.1) 		146.3
(-3) 		2017

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 3124
1 2 3 4 5 6 range
A 4089.4
(3)
P 		2592.6
(0.1)
P 		2451.5
(-0.1)
P 		1611.9
(-1.8)
P 		1849.6
(-1.3)
P 		965.2
(-3)
P 		3124
B 3645.1
(3)
P 		2698.9
(0.8)
P 		2612.8
(0.6)
P 		2132
(-0.6)
P 		1804.6
(-1.3)
P 		1100.4
(-3)
P 		2545
C 3412.3
(3)
P 		2809.5
(1.4)
P 		2255.6
(-0)
P 		2240.9
(-0.1)
P 		1344.6
(-2.4)
P 		1125.3
(-3)
P 		2287
avr 3715.6
(3) 		2700.3
(0.7) 		2440
(0.1) 		1994.9
(-0.9) 		1666.3
(-1.6) 		1063.6
(-3) 		2652
No Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 665
1 2 3 4 range
A 535.9
(3)
P 		453.5
(2)
P 		481.1
(2.4)
P 		27.7
(-3)
P 		508
B 413.8
(1.9)
P 		499.9
(3)
P 		428.6
(2.1)
P 		29.7
(-3)
P 		470
C 463
(1)
P 		683.3
(3)
P 		667.4
(2.9)
P 		18.6
(-3)
P 		665
avr 470.9
(2.1) 		545.6
(3) 		525.7
(2.8) 		25.3
(-3) 		520

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 1033
1 2 3 4 5 6 range
A 753.9
(1.5)
P 		922.1
(3)
P 		533.9
(-0.4)
P 		408.8
(-1.5)
P 		558.1
(-0.2)
P 		235
(-3)
P 		687
B 1268.3
(3)
P 		898.4
(0.4)
P 		634.5
(-1.4)
P 		564.7
(-1.9)
P 		733.2
(-0.7)
P 		410.3
(-3)
P 		858
C 1264.8
(3)
P 		857.3
(0.2)
P 		574.1
(-1.7)
P 		450.7
(-2.5)
P 		435.1
(-2.6)
P 		376.7
(-3)
P 		888
avr 1095.7
(3) 		892.6
(1.4) 		580.8
(-1.1) 		474.7
(-1.9) 		575.5
(-1.1) 		340.7
(-3) 		755
NetAffx Links Cluster Members
Consensus/Exemplar
GeneChip Array Information
Probe Set ID 183956_at
GeneChip Array C. elegans Genome Array
Organism Common Name Nematode
Probe Design Information
Transcript ID(Array Design) affy.Ce.1521
Sequence Type Exemplar sequence
Representative Public ID C48E7.1 NCBI
Target Description C48E7.1 /REP_DB=WormBase Gene ID /WP=CE08816 /TR=O02082 /GB=AAK21358.1 /SUBMIT=ST.LOUIS /CHR=1 /FEA=Sanger Annotation
Annotation Method Description
Annotation Description This probe set was annotated using the Matching Probes based pipeline to a RefSeq identifier using 1 transcript(s).
Annotation Grade This is a grade A annotation.
Annotation Transcript Cluster (# of Matching Probes) NM_059407(11)
Transcript Assignments
Representative
Transcript		 Description Matching Probes Related Probesets by Grade
NM_059407 NCBI Caenorhabditis elegans C48E7.1 (C48E7.1) mRNA, complete cds. 11/11 None
GENEFINDER00000002358 ENSEMBL cdna:GeneFinder chromosome:CEL140:I:6268398:6272404:1 11/11 None
C48E7.1 ENSEMBL cdna:known chromosome:CEL140:I:6268384:6272656:1 gene:C48E7.1 11/11 None
Annotation Notes
Cross Hybridizing mRNA Matched Probes Nature of Assignment Related Probesets by Grade
SNAP00000002345 4/11 Cross Hyb Matching Probes None
Genomic Alignment of Consensus/Exemplar Sequence
Assembly Wormbase March 2004
Alignment(s)
Position Identity Coverage Cytoband
chrI:6268326-6272333(+) 100.0 100.0
Public Domain and Genome References
Gene Title
Ensembl C48E7.1
Entrez Gene 172322 Entrez gene
SwissProt O02082 EMBL-EBI
WormBase CE08816 Wormbase
Functional Annotations
Protein Similarities
Method ID Description E-Value
blast AAK21358 Hypothetical protein C48E7.1 [Caenorhabditis elegans] ref|NP_491808.1| C48E7.1 [Caenorhabditis elegans] 4.0E-73
blast CAE67153 Hypothetical protein CBG12578 [Caenorhabditis briggsae] 1.0E-68
Protein Domains
Trans Membrane
ID Number Of Domains Domain Boundaries
NP_491808.1 1 99-121
C48E7.1 1 99-121
GENEFINDER00000002358 1 99-121
Sequence
Target Sequence 
>C. ELEGANS:183956_AT
tggcaaccatcgcgttgattggcgccgtctctggtcaagaacaacaggcatgcgctgtca
atcaactctttaatggacaaatttgcacgtgcgctccaggatatttctcttcagccaacg
atgactcaaaggcgcgttgcgatgatgaatgtgaagaggtgtatttctccgttttcacca
ccggaaagtgtgtggacaacatctttggcaaagtgccaaaggatcaacaacctgcatgta
atttgagatgtggaatcagaattcgtctttgggcaaccattgctgcattcgtcgttattg
ctgctgctctcgtatcccttgttcttgctcttccaatgtgtatcgcatcttgctcagcct
gtttgaatg

BLASTn GenBank NR
Probe Info
Probe Sequence(5'-3') Probe X Probe Y Probe Interrogation
Position 		Strandedness
TGGCAACCATCGCGTTGATTGGCGC 57 547 41 Antisense
CATGCGCTGTCAATCAACTCTTTAA 78 211 89 Antisense
ATGGACAAATTTGCACGTGCGCTCC 24 53 113 Antisense
GCGCTCCAGGATATTTCTCTTCAGC 452 287 131 Antisense
TTCTCTTCAGCCAACGATGACTCAA 147 693 145 Antisense
GATGACTCAAAGGCGCGTTGCGATG 99 413 160 Antisense
GAGGTGTATTTCTCCGTTTTCACCA 696 393 196 Antisense
TTGGGCAACCATTGCTGCATTCGTC 16 709 309 Antisense
TGCATTCGTCGTTATTGCTGCTGCT 419 579 324 Antisense
GCTCTTCCAATGTGTATCGCATCTT 373 301 367 Antisense
GCATCTTGCTCAGCCTGTTTGAATG 562 309 385 Antisense
Sequence Source Affymetrix Proprietary Database