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[183954_at]

Description C46F11.3 /REP_DB=WormBase Gene ID /WP=CE08774 /TR=Q93381 /GB=CAB03761.1 /SUBMIT=HINXTON /CHR=3 /FEA=Sanger Annotation
Cluster 6grp_high1_10_10 > 78      4grp_high_8_8 > 25      6grp_total > 77      4grp_total > 39      6grp_high1_sub > Cu      6grp_total_sub > Increase      6grp_rule_based > S6      

Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 119
1 2 3 4 range
A 239.3
(3)
P 		158.1
(-2.9)
M 		157.3
(-3)
A 		207.8
(0.7)
P 		82
B 198.7
(3)
P 		176.7
(1.3)
P 		120
(-3)
P 		188.2
(2.2)
P 		79
C 232.8
(3)
P 		171.7
(-2.4)
P 		208.5
(0.9)
P 		164.4
(-3)
P 		68
avr 223.6
(3) 		168.8
(-2.3) 		161.9
(-3) 		186.8
(-0.6) 		62

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 387
1 2 3 4 5 6 range
A 192.1
(-2.5)
A 		182.7
(-2.7)
P 		167.9
(-3)
P 		278.6
(-0.6)
P 		344
(0.8)
P 		446
(3)
P 		278
B 220.9
(-1.9)
P 		172
(-2.8)
A 		180.2
(-2.6)
P 		158.7
(-3)
P 		259
(-1.3)
P 		505
(3)
P 		346
C 252.3
(-1.8)
P 		181.1
(-3)
P 		298.1
(-1.1)
P 		228.8
(-2.2)
P 		277.3
(-1.4)
P 		545.8
(3)
P 		365
avr 221.8
(-2.2) 		178.6
(-3) 		215.4
(-2.3) 		222
(-2.2) 		293.4
(-0.8) 		498.9
(3) 		320
No Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 59
1 2 3 4 range
A 87.1
(3)
P 		34.3
(-2.6)
M 		41.1
(-1.9)
A 		30.4
(-3)
P 		57
B 63.4
(3)
P 		43.7
(-0.3)
P 		27.8
(-3)
P 		40.1
(-0.9)
P 		36
C 77
(3)
P 		49.4
(-0.4)
P 		72.7
(2.5)
P 		27.7
(-3)
P 		49
avr 75.8
(3) 		42.5
(-1.6) 		47.2
(-1) 		32.7
(-3) 		43

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 153
1 2 3 4 5 6 range
A 35.4
(-3)
A 		65
(-0.6)
P 		36.6
(-2.9)
P 		70.6
(-0.1)
P 		103.8
(2.6)
P 		108.6
(3)
P 		73
B 76.8
(-1.6)
P 		57.3
(-2.4)
A 		43.8
(-2.9)
P 		42
(-3)
P 		105.2
(-0.4)
P 		188.3
(3)
P 		146
C 93.5
(-0.9)
P 		55.3
(-2.6)
P 		75.9
(-1.7)
P 		46
(-3)
P 		89.7
(-1.1)
P 		182.7
(3)
P 		137
avr 68.6
(-2.1) 		59.2
(-2.6) 		52.1
(-3) 		52.9
(-3) 		99.6
(-0.4) 		159.9
(3) 		108
NetAffx Links Cluster Members
Consensus/Exemplar
GeneChip Array Information
Probe Set ID 183954_at
GeneChip Array C. elegans Genome Array
Organism Common Name Nematode
Probe Design Information
Transcript ID(Array Design) affy.Ce.6982
Sequence Type Exemplar sequence
Representative Public ID C46F11.3 NCBI
Target Description C46F11.3 /REP_DB=WormBase Gene ID /WP=CE08774 /TR=Q93381 /GB=CAB03761.1 /SUBMIT=HINXTON /CHR=3 /FEA=Sanger Annotation
Annotation Method Description
Annotation Description This probe set was annotated using the Matching Probes based pipeline to a RefSeq identifier using 1 transcript(s).
Annotation Grade This is a grade A annotation.
Annotation Transcript Cluster (# of Matching Probes) NM_065338(11)
Transcript Assignments
Representative
Transcript		 Description Matching Probes Related Probesets by Grade
NM_065338 NCBI Caenorhabditis elegans C46F11.3 (C46F11.3) mRNA, complete cds. 11/11 None
SNAP00000037470 ENSEMBL cdna:SNAP chromosome:CEL140:III:3646572:3650314:-1 10/11 None
GENEFINDER00000037475 ENSEMBL cdna:GeneFinder chromosome:CEL140:III:3648891:3651160:-1 11/11 None
C46F11.3 ENSEMBL cdna:known chromosome:CEL140:III:3648891:3650725:-1 gene:C46F11.3 11/11 None
Annotation Notes
There are no noteworthy cross hybridizing mRNAs found for this probe set.
Genomic Alignment of Consensus/Exemplar Sequence
Assembly Wormbase March 2004
Alignment(s)
Position Identity Coverage Cytoband
chrIII:3648890-3650677(-) 99.56 99.56
Public Domain and Genome References
Gene Title
Ensembl C46F11.3
Entrez Gene 183517 Entrez gene
SwissProt Q93381 EMBL-EBI
WormBase CE08774 Wormbase
Functional Annotations
Protein Similarities
Method ID Description E-Value
blast CAB03761 Hypothetical protein C46F11.3 [Caenorhabditis elegans] ref|NP_497739.1| C46F11.3 [Caenorhabditis elegans] 1.0E-171
blast CAB03761 Hypothetical protein C46F11.3 [Caenorhabditis elegans] ref|NP_497739.1| C46F11.3 [Caenorhabditis elegans] 1.0E-167
blast CAB03761 Hypothetical protein C46F11.3 [Caenorhabditis elegans] ref|NP_497739.1| C46F11.3 [Caenorhabditis elegans] 1.0E-127
blast CAE64941 Hypothetical protein CBG09772 [Caenorhabditis briggsae] 1.0E-78
blast CAE64941 Hypothetical protein CBG09772 [Caenorhabditis briggsae] 2.0E-78
blast CAE64941 Hypothetical protein CBG09772 [Caenorhabditis briggsae] 3.0E-69
Sequence
Target Sequence 
>C. ELEGANS:183954_AT
agtacaatcgggtccgccaatctacaaaaatcgattacgcggagcctgaaaaagtgtacg
atattatatatgcagttcggaaaaggcctatcctatgggatcaacgcctgatttgtcatc
ggaattcgaatttgtctcgccgtgcttgggatcaactcgacttggaacttggaatagatg
aagagtatccattggctcggcgtaaacaaatctggaagagtaaaagagattatttcgtat
cagcggtgaacgccgccaatctgagaaaatggatttatgcagatgcattagagttctacc
gtccaatgataaatttccgaacgacattctgtctccgtccaaccgtcgctcagccatctc
aaagtgttcatgataaattagtattggctgataagaatatccaatgcacacctggtgata
agaaaaatgttctgacatttcttctaaaatctctctacgacaccggaatgt

BLASTn GenBank NR
Probe Info
Probe Sequence(5'-3') Probe X Probe Y Probe Interrogation
Position 		Strandedness
AGTACAATCGGGTCCGCCAATCTAC 160 61 356 Antisense
GGCCTATCCTATGGGATCAACGCCT 687 543 440 Antisense
ATCAACGCCTGATTTGTCATCGGAA 643 25 455 Antisense
GGAATTCGAATTTGTCTCGCCGTGC 640 533 476 Antisense
GCTTGGGATCAACTCGACTTGGAAC 239 305 499 Antisense
GAGTATCCATTGGCTCGGCGTAAAC 641 397 538 Antisense
GTATCAGCGGTGAACGCCGCCAATC 37 453 592 Antisense
GATGCATTAGAGTTCTACCGTCCAA 552 411 637 Antisense
TTTCCGAACGACATTCTGTCTCCGT 276 669 669 Antisense
TCGCTCAGCCATCTCAAAGTGTTCA 357 597 701 Antisense
AAATCTCTCTACGACACCGGAATGT 563 115 802 Antisense
Sequence Source Affymetrix Proprietary Database