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[183950_at]

Description C18H9.8 /REP_DB=WormBase Gene ID /WP=CE27719 /TR=Q18106 /GB=AAC46692.2 /SUBMIT=ST.LOUIS /CHR=2 /FEA=Sanger Annotation
Cluster 6grp_total > 06      4grp_total > 22      6grp_total_sub > Decrease      

Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 109
1 2 3 4 range
A 89.3
(3)
A 		38.4
(-0.8)
A 		8.9
(-3)
A 		64.1
(1.1)
A 		80
B 90.7
(2.8)
P 		61.3
(0)
A 		29.9
(-3)
A 		92.3
(3)
A 		62
C 117.7
(3)
P 		30.4
(-2.9)
A 		29.1
(-3)
A 		111.6
(2.6)
A 		89
avr 99.2
(3) 		43.4
(-1.4) 		22.6
(-3) 		89.3
(2.2) 		77

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 115
1 2 3 4 5 6 range
A 87.7
(0.7)
A 		46.7
(-1.7)
A 		126.7
(3)
A 		49.5
(-1.5)
A 		23.7
(-3)
A 		37.9
(-2.2)
A 		103
B 109.2
(3)
A 		74
(-0.3)
A 		63.2
(-1.4)
A 		51.1
(-2.5)
A 		46
(-3)
A 		53
(-2.3)
P 		63
C 70.1
(3)
P 		49.8
(0.9)
A 		12
(-3)
A 		13.2
(-2.9)
A 		63.2
(2.3)
A 		38.8
(-0.2)
A 		58
avr 89
(3) 		56.8
(-0.8) 		67.3
(0.5) 		37.9
(-3) 		44.3
(-2.2) 		43.2
(-2.4) 		51
No Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 37
1 2 3 4 range
A 32.5
(3)
A 		8.3
(-1.8)
A 		2.3
(-3)
A 		9.4
(-1.6)
A 		30
B 28.9
(3)
P 		15.1
(-0.8)
A 		6.9
(-3)
A 		19.7
(0.5)
A 		22
C 39
(3)
P 		8.7
(-3)
A 		10.1
(-2.7)
A 		18.8
(-1)
A 		30
avr 33.5
(3) 		10.7
(-2) 		6.4
(-3) 		16
(-0.9) 		27

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 35
1 2 3 4 5 6 range
A 16.2
(-0.3)
A 		16.6
(-0.2)
A 		27.6
(3)
A 		12.6
(-1.4)
A 		7.1
(-3)
A 		9.2
(-2.4)
A 		21
B 38
(3)
A 		24.6
(-0.3)
A 		15.3
(-2.6)
A 		13.5
(-3)
A 		18.7
(-1.7)
A 		19.8
(-1.5)
P 		25
C 26
(3)
P 		15.2
(0.2)
A 		3
(-2.9)
A 		2.6
(-3)
A 		20.5
(1.6)
A 		13
(-0.3)
A 		23
avr 26.7
(3) 		18.8
(0.2) 		15.3
(-1) 		9.6
(-3) 		15.4
(-1) 		14
(-1.5) 		17
NetAffx Links Cluster Members
Consensus/Exemplar
GeneChip Array Information
Probe Set ID 183950_at
GeneChip Array C. elegans Genome Array
Organism Common Name Nematode
Probe Design Information
Transcript ID(Array Design) affy.Ce.5732
Sequence Type Exemplar sequence
Representative Public ID C18H9.8 NCBI
Target Description C18H9.8 /REP_DB=WormBase Gene ID /WP=CE27719 /TR=Q18106 /GB=AAC46692.2 /SUBMIT=ST.LOUIS /CHR=2 /FEA=Sanger Annotation
Annotation Method Description
Annotation Description This probe set was annotated using the Matching Probes based pipeline to a RefSeq identifier using 1 transcript(s).
Annotation Grade This is a grade A annotation.
Annotation Transcript Cluster (# of Matching Probes) NM_062958(11)
Transcript Assignments
Representative
Transcript		 Description Matching Probes Related Probesets by Grade
NM_062958 NCBI Caenorhabditis elegans C18H9.8 (C18H9.8) mRNA, complete cds. 11/11 None
SNAP00000038935 ENSEMBL cdna:SNAP chromosome:CEL140:II:6680077:6682889:1 11/11 None
GENEFINDER00000038947 ENSEMBL cdna:GeneFinder chromosome:CEL140:II:6677511:6683296:1 11/11 None
C18H9.8 ENSEMBL cdna:known chromosome:CEL140:II:6679488:6682914:1 gene:C18H9.8 11/11 None
Annotation Notes
There are no noteworthy cross hybridizing mRNAs found for this probe set.
Genomic Alignment of Consensus/Exemplar Sequence
Assembly Wormbase March 2004
Alignment(s)
Position Identity Coverage Cytoband
chrII:6679529-6682886(+) 99.95 100.0
Public Domain and Genome References
Gene Title
Ensembl C18H9.8
Entrez Gene 174102 Entrez gene
SwissProt Q18106 EMBL-EBI
WormBase CE27719 Wormbase
Functional Annotations
Ortholog
ID Title Organism
CANINE:1605315_AT similar to Coiled-coil domain containing protein 2 (Capillary morphogenesis protein-1) (CMG-1) cfa
CANINE:1587505_AT similar to Coiled-coil domain containing protein 2 (Capillary morphogenesis protein-1) (CMG-1) cfa
CANINE_2:CFA.15266.1.S1_S_AT similar to Coiled-coil domain containing protein 2 (Capillary morphogenesis protein-1) (CMG-1) cfa
CANINE_2:CFA.830.1.S1_AT similar to Coiled-coil domain containing protein 2 (Capillary morphogenesis protein-1) (CMG-1) cfa
CANINE_2:CFAAFFX.3460.1.S1_S_AT similar to Coiled-coil domain containing protein 2 (Capillary morphogenesis protein-1) (CMG-1) cfa
CHICKEN:GGA.12675.1.S1_AT similar to coiled-coil domain containing 2; capillary morphogenesis protein 1 gga
HG-U133_PLUS_2:219174_AT coiled-coil domain containing 2 hs
HG-U133A:219174_AT coiled-coil domain containing 2 hs
HG-U133A_2:219174_AT coiled-coil domain containing 2 hs
HU35KSUBA:N71513_S_AT coiled-coil domain containing 2 hs
U133_X3P:G13376668_3P_S_AT coiled-coil domain containing 2 hs
HG-U95B:45158_S_AT coiled-coil domain containing 2 hs
HG-U95B:45159_R_AT coiled-coil domain containing 2 hs
HG-U133A_2:61732_R_AT coiled-coil domain containing 2 hs
HG-U133_PLUS_2:61732_R_AT coiled-coil domain containing 2 hs
HG-U133A:61732_R_AT coiled-coil domain containing 2 hs
HG-U95C:61732_R_AT coiled-coil domain containing 2 hs
MG-U74BV2:164067_AT coiled-coil domain containing 2 mm
MG-U74CV2:165544_AT coiled-coil domain containing 2 mm
MG-U74CV2:170637_AT coiled-coil domain containing 2 mm
MOE430A:1418942_AT coiled-coil domain containing 2 mm
MOUSE430A_2:1418942_AT coiled-coil domain containing 2 mm
MOUSE430_2:1418942_AT coiled-coil domain containing 2 mm
MU19KSUBC:TC35260_AT coiled-coil domain containing 2 mm
RG-U34B:RC_AA924099_AT coiled-coil domain containing 2 rn
RG-U34C:RC_AI236405_S_AT coiled-coil domain containing 2 rn
RAE230B:1383876_AT coiled-coil domain containing 2 rn
RAT230_2:1383876_AT coiled-coil domain containing 2 rn
RAE230B:1386671_AT Coiled-coil domain containing 2 rn
RAT230_2:1386671_AT Coiled-coil domain containing 2 rn
RAT230_2:1396652_AT Coiled-coil domain containing 2 rn
RAE230B:1396652_AT Coiled-coil domain containing 2 rn
Protein Similarities
Method ID Description E-Value
blast AAC46692 Hypothetical protein C18H9.8 [Caenorhabditis elegans] ref|NP_495359.1| C18H9.8 [Caenorhabditis elegans] 0.0
blast CAE66044 Hypothetical protein CBG11243 [Caenorhabditis briggsae] 0.0
blast AAF39909 Hypothetical protein H43E16.1 [Caenorhabditis elegans] ref|NP_495358.1| H43E16.1 [Caenorhabditis elegans] 1.0E-101
blast CAF92506 unnamed protein product [Tetraodon nigroviridis] 2.0E-42
Sequence
Target Sequence 
>C. ELEGANS:183950_AT
gaattctccgacgcagttgtactgattttgagaaaaatatctgccaatttgaagaaagtg
aatctagaagatcagataactgatttagatgaacgaggtctcactttacagaccggaaat
gtggatgaacttaaagaaatgcatgttcgacttcaagaagagcttatatcaattgaggat
atggaattggcgttaaatgaagaaattgataatttggaaactgaggagaaaaaaatagat
caggaattggcgggagtcgggaagaatgtagattcagatgggctccgacaagagcttgaa
gaacgtcaaaaaaggcttgaagatgaagctccagctcgttcacatgaaatgcaacagtta
gaagcaaatgtagcaagtataagaaatgaacttcattcaattccaggatactctcaacac
aaaatgcttcgcgaacgactggaagctgttgagaaacgtactgctgcaaaatcacttgac
atgagcttgaggaagactgaaattgactacgaagatattaaaacagagagcattcgactt
cagga

BLASTn GenBank NR
Probe Info
Probe Sequence(5'-3') Probe X Probe Y Probe Interrogation
Position 		Strandedness
GAATTCTCCGACGCAGTTGTACTGA 9 325 1456 Antisense
TTAGATGAACGAGGTCTCACTTTAC 403 681 1540 Antisense
AGATCAGGAATTGGCGGGAGTCGGG 636 65 1692 Antisense
GTAGATTCAGATGGGCTCCGACAAG 710 453 1723 Antisense
AGATGAAGCTCCAGCTCGTTCACAT 600 67 1776 Antisense
GCTCCAGCTCGTTCACATGAAATGC 31 299 1783 Antisense
TCAATTCCAGGATACTCTCAACACA 188 635 1852 Antisense
TCTCAACACAAAATGCTTCGCGAAC 587 613 1867 Antisense
GCTGTTGAGAAACGTACTGCTGCAA 696 295 1900 Antisense
GTACTGCTGCAAAATCACTTGACAT 582 457 1913 Antisense
AAACAGAGAGCATTCGACTTCAGGA 710 127 1976 Antisense
Sequence Source Affymetrix Proprietary Database