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[183949_at]

Description F13H8.1 /REP_DB=WormBase Gene ID /WP=CE02635 /TR=Q19435 /GB=AAK31484.1 /SUBMIT=ST.LOUIS /CHR=2 /FEA=Sanger Annotation
Cluster 6grp_highest_10_10 > 43      6grp_high1_10_10 > 33      4grp_highest_8_8 > 59      4grp_high_8_8 > 25      6grp_highest_nonorm > 81      6grp_total > 02      4grp_total > 38      6grp_highest_sub > 02      6grp_high1_sub > 02      

Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 323
1 2 3 4 range
A 470.8
(3)
P 		236.5
(-3)
P 		314.2
(-1)
P 		302.7
(-1.3)
P 		234
B 411.5
(3)
P 		366.8
(0.9)
P 		282.6
(-3)
P 		304.9
(-2)
P 		129
C 549.4
(3)
P 		354.3
(-0.6)
P 		226.2
(-3)
P 		355.4
(-0.6)
P 		323
avr 477.2
(3) 		319.2
(-1.7) 		274.3
(-3) 		321
(-1.6) 		203

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 227
1 2 3 4 5 6 range
A 300.4
(-0.6)
P 		338
(0.6)
P 		275.6
(-1.4)
P 		413.1
(3)
P 		302.6
(-0.5)
P 		223.5
(-3)
P 		190
B 244.3
(0.5)
P 		284.8
(3)
P 		254.3
(1.1)
P 		186.6
(-3)
P 		241.6
(0.4)
P 		203.5
(-2)
P 		98
C 231.4
(-1.3)
P 		320.7
(3)
P 		249.5
(-0.4)
P 		219
(-1.9)
P 		239.8
(-0.9)
P 		195.8
(-3)
P 		125
avr 258.7
(-0.1) 		314.5
(3) 		259.8
(-0.1) 		272.9
(0.7) 		261.3
(0) 		207.6
(-3) 		107
No Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 138
1 2 3 4 range
A 171.4
(3)
P 		51.3
(-2.7)
P 		82.1
(-1.2)
P 		44.3
(-3)
P 		127
B 131.2
(3)
P 		90.6
(-0.7)
P 		65.5
(-3)
P 		65
(-3)
P 		66
C 181.9
(3)
P 		101.9
(-0.9)
P 		78.9
(-2.1)
P 		59.9
(-3)
P 		122
avr 161.5
(3) 		81.3
(-1.6) 		75.5
(-1.9) 		56.4
(-3) 		105

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 76
1 2 3 4 5 6 range
A 55.4
(-2.9)
P 		120.2
(3)
P 		60
(-2.5)
P 		104.8
(1.6)
P 		91.3
(0.4)
P 		54.4
(-3)
P 		66
B 85
(1.4)
P 		94.8
(2.6)
P 		61.7
(-1.5)
P 		49.4
(-3)
P 		98.1
(3)
P 		75.9
(0.3)
P 		49
C 85.8
(1.7)
P 		97.8
(3)
P 		63.5
(-0.8)
P 		44
(-3)
P 		77.6
(0.7)
P 		65.6
(-0.6)
P 		54
avr 75.4
(-1.1) 		104.3
(3) 		61.7
(-3) 		66.1
(-2.4) 		89
(0.8) 		65.3
(-2.5) 		43
NetAffx Links Cluster Members
Consensus/Exemplar
GeneChip Array Information
Probe Set ID 183949_at
GeneChip Array C. elegans Genome Array
Organism Common Name Nematode
Probe Design Information
Transcript ID(Array Design) affy.Ce.5215
Sequence Type Exemplar sequence
Representative Public ID F13H8.1 NCBI
Target Description F13H8.1 /REP_DB=WormBase Gene ID /WP=CE02635 /TR=Q19435 /GB=AAK31484.1 /SUBMIT=ST.LOUIS /CHR=2 /FEA=Sanger Annotation
Annotation Method Description
Annotation Description This probe set was annotated using the Matching Probes based pipeline to a RefSeq identifier using 1 transcript(s).
Annotation Grade This is a grade A annotation.
Annotation Transcript Cluster (# of Matching Probes) NM_001026911(11), NM_001026910(11)
Transcript Assignments
Representative
Transcript		 Description Matching Probes Related Probesets by Grade
NM_001026911 NCBI Caenorhabditis elegans F13H8.1b (F13H8.1) mRNA, complete cds. 11/11 None
NM_001026910 NCBI Caenorhabditis elegans F13H8.1a (F13H8.1) mRNA, complete cds. 11/11 None
SNAP00000031309 ENSEMBL cdna:SNAP chromosome:CEL140:II:6283334:6284593:1 11/11 None
GENEFINDER00000031318 ENSEMBL cdna:GeneFinder chromosome:CEL140:II:6283334:6284593:1 11/11 None
F13H8.1a ENSEMBL cdna:known chromosome:CEL140:II:6283334:6284125:1 gene:F13H8.1 11/11 None
F13H8.1b ENSEMBL cdna:known chromosome:CEL140:II:6283334:6284641:1 gene:F13H8.1 11/11 None
Annotation Notes
There are no noteworthy cross hybridizing mRNAs found for this probe set.
Genomic Alignment of Consensus/Exemplar Sequence
Assembly Wormbase March 2004
Alignment(s)
Position Identity Coverage Cytoband
chrII:6283330-6284122(+) 100.0 100.0
Public Domain and Genome References
Ensembl F13H8.1
Functional Annotations
Protein Similarities
Method ID Description E-Value
blast AAU20847 Hypothetical protein F13H8.1b [Caenorhabditis elegans] ref|NP_001022082.1| F13H8.1b [Caenorhabditis elegans] 1.0E-149
blast CAE59282 Hypothetical protein CBG02614 [Caenorhabditis briggsae] 1.0E-131
blast AAK31484 Hypothetical protein F13H8.1a [Caenorhabditis elegans] ref|NP_001022081.1| F13H8.1a [Caenorhabditis elegans] 5.0E-86
Sequence
Target Sequence 
>C. ELEGANS:183949_AT
gtctcaaccgaaacgtcttggtcgaagagtttttccaaatcagcaatcagatcaaattag
aagatcacaacagtttttgcattatgtcccaccgccagaaccaccagttgattatacaat
tcgagttccacaagaaaaagactataaagtaatcggtgacgtatttcaacgcccctcgtc
tgtcgactattcaaaagaggaaacacatttgacgtcatcatcaaagggtactcctcgtct
tggaggacgtcgaaatacggttgaagaagttttggatgaactcgacaccgtactttttga
agcttcaattccatttgatgagctcaaacaaaaagtggaaaggttcaatctaacattcaa
accatacgctcctg

BLASTn GenBank NR
Probe Info
Probe Sequence(5'-3') Probe X Probe Y Probe Interrogation
Position 		Strandedness
GTCTCAACCGAAACGTCTTGGTCGA 100 467 33 Antisense
GAGTTTTTCCAAATCAGCAATCAGA 185 399 59 Antisense
ACAGTTTTTGCATTATGTCCCACCG 211 107 102 Antisense
CCGCCAGAACCACCAGTTGATTATA 39 263 124 Antisense
TAATCGGTGACGTATTTCAACGCCC 574 581 182 Antisense
CCCTCGTCTGTCGACTATTCAAAAG 59 261 205 Antisense
GAGGAAACACATTTGACGTCATCAT 370 403 229 Antisense
ACGTCATCATCAAAGGGTACTCCTC 396 91 244 Antisense
GGTACTCCTCGTCTTGGAGGACGTC 294 501 259 Antisense
GAACTCGACACCGTACTTTTTGAAG 248 347 310 Antisense
CTAACATTCAAACCATACGCTCCTG 342 227 382 Antisense
Sequence Source Affymetrix Proprietary Database