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[183948_at]

Description ZK1010.8 /REP_DB=WormBase Gene ID /WP=CE15509 /TR=O18287 /GB=CAB04974.1 /SUBMIT=HINXTON /CHR=3 /FEA=Sanger Annotation
Cluster 6grp_total > 09      4grp_total > 44      

Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 78
1 2 3 4 range
A 72.7
(0.4)
A 		58.2
(-3)
A 		61.5
(-2.2)
A 		83.9
(3)
A 		26
B 73.2
(0.6)
A 		105
(3)
A 		59.4
(-0.5)
A 		27.1
(-3)
A 		78
C 87.3
(3)
A 		70.6
(-3)
A 		71.5
(-2.7)
A 		72.9
(-2.2)
A 		17
avr 77.7
(2.9) 		77.9
(3) 		64.1
(-2) 		61.3
(-3) 		17

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 100
1 2 3 4 5 6 range
A 102.8
(3)
A 		87.7
(1.6)
A 		62.7
(-0.8)
A 		39.3
(-3)
A 		98.4
(2.6)
A 		44.3
(-2.5)
A 		64
B 119.9
(3)
A 		40.2
(-3)
A 		69.4
(-0.8)
A 		100.7
(1.6)
A 		50.2
(-2.2)
A 		76.8
(-0.2)
A 		80
C 139.4
(3)
A 		49.2
(-2.8)
A 		60.1
(-2.1)
A 		121
(1.8)
A 		51.1
(-2.7)
A 		46
(-3)
A 		93
avr 120.7
(3) 		59
(-2.7) 		64.1
(-2.2) 		87
(-0.1) 		66.6
(-2) 		55.7
(-3) 		65
No Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 23
1 2 3 4 range
A 26.5
(3)
A 		12.6
(-2.9)
A 		16.1
(-1.4)
A 		12.3
(-3)
A 		14
B 23.3
(2.2)
A 		25.9
(3)
A 		13.8
(-0.6)
A 		5.8
(-3)
A 		20
C 28.9
(3)
A 		20.3
(-0.1)
A 		24.9
(1.6)
A 		12.3
(-3)
A 		17
avr 26.2
(3) 		19.6
(0.5) 		18.3
(0.1) 		10.1
(-3) 		16

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 42
1 2 3 4 5 6 range
A 18.9
(-0.5)
A 		31.2
(3)
A 		13.6
(-2)
A 		10
(-3)
A 		29.7
(2.6)
A 		10.8
(-2.8)
A 		21
B 41.7
(3)
A 		13.4
(-3)
A 		16.9
(-2.3)
A 		26.7
(-0.2)
A 		20.4
(-1.5)
A 		28.6
(0.2)
A 		28
C 51.7
(3)
A 		15
(-3)
A 		15.3
(-3)
A 		24.3
(-1.5)
A 		16.5
(-2.8)
A 		15.4
(-2.9)
A 		37
avr 37.4
(3) 		19.9
(-1.8) 		15.3
(-3) 		20.3
(-1.6) 		22.2
(-1.1) 		18.3
(-2.2) 		22
NetAffx Links Cluster Members
Consensus/Exemplar
GeneChip Array Information
Probe Set ID 183948_at
GeneChip Array C. elegans Genome Array
Organism Common Name Nematode
Probe Design Information
Transcript ID(Array Design) affy.Ce.7250
Sequence Type Exemplar sequence
Representative Public ID ZK1010.8 NCBI
Target Description ZK1010.8 /REP_DB=WormBase Gene ID /WP=CE15509 /TR=O18287 /GB=CAB04974.1 /SUBMIT=HINXTON /CHR=3 /FEA=Sanger Annotation
Annotation Method Description
Annotation Description This probe set was annotated using the Matching Probes based pipeline to a RefSeq identifier using 1 transcript(s).
Annotation Grade This is a grade A annotation.
Annotation Transcript Cluster (# of Matching Probes) NM_067300(11)
Transcript Assignments
Representative
Transcript		 Description Matching Probes Related Probesets by Grade
NM_067300 NCBI Caenorhabditis elegans ZK1010.8 (ZK1010.8) mRNA, complete cds. 11/11 None
SNAP00000035104 ENSEMBL cdna:SNAP chromosome:CEL140:III:12995730:13001729:-1 11/11 None
GENEFINDER00000035113 ENSEMBL cdna:GeneFinder chromosome:CEL140:III:12995730:12999987:-1 11/11 None
ZK1010.8.1 ENSEMBL cdna:known chromosome:CEL140:III:12995254:13000186:-1 gene:ZK1010.8 11/11 A 
ZK1010.8.2 ENSEMBL cdna:known chromosome:CEL140:III:12995266:13000027:-1 gene:ZK1010.8 11/11 A 
Annotation Notes
There are no noteworthy cross hybridizing mRNAs found for this probe set.
Genomic Alignment of Consensus/Exemplar Sequence
Assembly Wormbase March 2004
Alignment(s)
Position Identity Coverage Cytoband
chrIII:12995725-12999983(-) 100.0 100.0
Public Domain and Genome References
Gene Title
Ensembl ZK1010.8
Entrez Gene 176722 Entrez gene
SwissProt O18287 EMBL-EBI
WormBase CE15509 Wormbase
Functional Annotations
Protein Similarities
Method ID Description E-Value
blast CAB04974 Hypothetical protein ZK1010.8 [Caenorhabditis elegans] ref|NP_499701.1| ZK1010.8 [Caenorhabditis elegans] 0.0
blast CAE69572 Hypothetical protein CBG15784 [Caenorhabditis briggsae] 1.0E-166
blast CAE69572 Hypothetical protein CBG15784 [Caenorhabditis briggsae] 1.0E-163
blast CAB04974 Hypothetical protein ZK1010.8 [Caenorhabditis elegans] ref|NP_499701.1| ZK1010.8 [Caenorhabditis elegans] 3.0E-93
blast CAE69572 Hypothetical protein CBG15784 [Caenorhabditis briggsae] 4.0E-74
Protein Domains
Trans Membrane
ID Number Of Domains Domain Boundaries
NP_499701.1 4 10-32,82-104,114-136,149-171
ZK1010.8.1 4 10-32,82-104,114-136,149-171
ZK1010.8.2 4 10-32,82-104,114-136,149-171
SNAP00000035104 1 18-40
GENEFINDER00000035113 4 10-32,94-116,126-148,161-183
Sequence
Target Sequence 
>C. ELEGANS:183948_AT
gaagcacagcagaaggcgtcgtcgaaatcatgtatcaaaaatttacctggatcctaatga
tgctcgacgccatcagaagcatcatcacagatctcattcctattctcgacctgtcgctcc
tccacaacttcaactggcacctcctgagcctgtcactgcggctccttatctggctcttga
ctcggcggcccttttcaccccgaaaccgaagggtgacctgttggttccggaaatagttcc
ggattggagaagagagtggccagcggtgcctgatgtgcagttacagaggcatttgaataa
gcagaggaaggaggatttgaggagaatggggtataatgttccaccagggcctggagcacc
aggcccgagtacaaaactcgacttctacgcgcccgaaccagaccagatcggttttccgtg
gaagtacaagacgatgaacgagacactgcgggcgaagcgagagacgccggccgaacgaat
caagaagctctattaccagcattggcca

BLASTn GenBank NR
Probe Info
Probe Sequence(5'-3') Probe X Probe Y Probe Interrogation
Position 		Strandedness
GAAGCACAGCAGAAGGCGTCGTCGA 385 337 558 Antisense
CTGGATCCTAATGATGCTCGACGCC 469 241 604 Antisense
GCTCGACGCCATCAGAAGCATCATC 599 299 619 Antisense
ATCATCACAGATCTCATTCCTATTC 2 31 638 Antisense
CCAGCGGTGCCTGATGTGCAGTTAC 263 273 817 Antisense
ATAATGTTCCACCAGGGCCTGGAGC 20 23 890 Antisense
AGCACCAGGCCCGAGTACAAAACTC 569 75 912 Antisense
ACCAGACCAGATCGGTTTTCCGTGG 614 83 954 Antisense
TGAACGAGACACTGCGGGCGAAGCG 354 569 992 Antisense
GCCGGCCGAACGAATCAAGAAGCTC 591 283 1023 Antisense
GAAGCTCTATTACCAGCATTGGCCA 153 343 1041 Antisense
Sequence Source Affymetrix Proprietary Database