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[183947_at]

Description K02E7.6 /REP_DB=WormBase Gene ID /WP=CE11632 /TR=O17252 /GB=AAB71027.1 /SUBMIT=ST.LOUIS /CHR=2 /FEA=Sanger Annotation
Cluster 6grp_total > 12      4grp_total > 54      6grp_total_sub > Hat      6grp_rule_based > S2      4grp_rule_based > L1      

Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 624
1 2 3 4 range
A 490.7
(3)
P 		270.4
(-0.2)
P 		152
(-1.9)
P 		72.9
(-3)
A 		418
B 645.6
(3)
P 		310.1
(-0.2)
P 		159.5
(-1.7)
P 		21.6
(-3)
A 		624
C 568.3
(3)
P 		281.6
(-0.3)
P 		233.2
(-0.8)
P 		43.9
(-3)
A 		524
avr 568.2
(3) 		287.4
(-0.2) 		181.6
(-1.4) 		46.1
(-3) 		522

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 288
1 2 3 4 5 6 range
A 135.6
(-0.8)
P 		307.8
(3)
P 		187.3
(0.4)
P 		82.7
(-1.9)
P 		36
(-3)
A 		34.7
(-3)
A 		273
B 201.9
(1.8)
P 		244.8
(3)
P 		211.5
(2.1)
P 		70
(-1.9)
P 		34.6
(-2.9)
A 		31.3
(-3)
P 		214
C 162
(0.3)
P 		277
(3)
P 		149.5
(0)
P 		95.9
(-1.2)
P 		20.3
(-3)
A 		20.3
(-3)
P 		257
avr 166.5
(0.3) 		276.5
(3) 		182.8
(0.7) 		82.9
(-1.7) 		30.3
(-3) 		28.8
(-3) 		248
No Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 201
1 2 3 4 range
A 178.7
(3)
P 		58.7
(-1.3)
P 		39.7
(-2)
P 		10.7
(-3)
A 		168
B 205.9
(3)
P 		76.6
(-0.9)
P 		37
(-2)
P 		4.6
(-3)
A 		201
C 188.1
(3)
P 		81
(-0.6)
P 		81.3
(-0.5)
P 		7.4
(-3)
A 		181
avr 190.9
(3) 		72.1
(-0.9) 		52.7
(-1.5) 		7.6
(-3) 		183

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 103
1 2 3 4 5 6 range
A 25
(-2)
P 		109.5
(3)
P 		40.8
(-1.1)
P 		21
(-2.3)
P 		10.9
(-2.9)
A 		8.4
(-3)
A 		101
B 70.2
(2)
P 		81.5
(3)
P 		51.4
(0.4)
P 		18.6
(-2.4)
P 		14.1
(-2.8)
A 		11.7
(-3)
P 		70
C 60
(1.1)
P 		84.5
(3)
P 		38.1
(-0.6)
P 		19.3
(-2)
P 		6.6
(-3)
A 		6.8
(-3)
P 		78
avr 51.7
(0.1) 		91.8
(3) 		43.4
(-0.5) 		19.6
(-2.2) 		10.5
(-2.9) 		9
(-3) 		83
NetAffx Links Cluster Members
Consensus/Exemplar
GeneChip Array Information
Probe Set ID 183947_at
GeneChip Array C. elegans Genome Array
Organism Common Name Nematode
Probe Design Information
Transcript ID(Array Design) affy.Ce.5609
Sequence Type Exemplar sequence
Representative Public ID K02E7.6 NCBI
Target Description K02E7.6 /REP_DB=WormBase Gene ID /WP=CE11632 /TR=O17252 /GB=AAB71027.1 /SUBMIT=ST.LOUIS /CHR=2 /FEA=Sanger Annotation
Annotation Method Description
Annotation Description This probe set was annotated using the Matching Probes based pipeline to a RefSeq identifier using 1 transcript(s).
Annotation Grade This is a grade A annotation.
Annotation Transcript Cluster (# of Matching Probes) NM_061500(11)
Transcript Assignments
Representative
Transcript		 Description Matching Probes Related Probesets by Grade
NM_061500 NCBI Caenorhabditis elegans K02E7.6 (K02E7.6) mRNA, complete cds. 11/11 None
SNAP00000023023 ENSEMBL cdna:SNAP chromosome:CEL140:II:1057218:1059205:1 11/11 None
GENEFINDER00000023034 ENSEMBL cdna:GeneFinder chromosome:CEL140:II:1057218:1059205:1 11/11 None
K02E7.6.1 ENSEMBL cdna:known chromosome:CEL140:II:1057189:1059286:1 gene:K02E7.6 11/11 None
K02E7.6.2 ENSEMBL cdna:known chromosome:CEL140:II:1057218:1059277:1 gene:K02E7.6 11/11 None
Annotation Notes
There are no noteworthy cross hybridizing mRNAs found for this probe set.
Genomic Alignment of Consensus/Exemplar Sequence
Assembly Wormbase March 2004
Alignment(s)
Position Identity Coverage Cytoband
chrII:1057216-1059204(+) 100.0 100.0
Public Domain and Genome References
Gene Title
Ensembl K02E7.6
Entrez Gene 173488 Entrez gene
SwissProt O17252 EMBL-EBI
WormBase CE33417 Wormbase
Functional Annotations
Protein Similarities
Method ID Description E-Value
blast AAB71027 Hypothetical protein K02E7.6 [Caenorhabditis elegans] ref|NP_493901.2| K02E7.6 [Caenorhabditis elegans] 0.0
blast AAF39822 Hypothetical protein F45D11.14 [Caenorhabditis elegans] ref|NP_493883.1| F45D11.14 [Caenorhabditis elegans] 0.0
blast AAF39810 Hypothetical protein F45D11.16 [Caenorhabditis elegans] gb|AAF39811.1| Hypothetical protein F45D11.15 [Caenorhabditis elegans] ref|NP_493885.1| F45D11.15 [Caenorhabditis elegans] ref|NP_493887.1| F45D11.16 [Caenorhabditis elegans] 0.0
blast AAF39822 Hypothetical protein F45D11.14 [Caenorhabditis elegans] ref|NP_493883.1| F45D11.14 [Caenorhabditis elegans] 1.0E-159
Protein Domains
Database ID Description E-Value
Pfam IPR007767 EMBL-EBI Protein of unknown function DUF684 5.2E-102
Pfam IPR007767 EMBL-EBI Protein of unknown function DUF684 1.0E-126
Pfam IPR007767 EMBL-EBI Protein of unknown function DUF684 2.1E-51
Sequence
Target Sequence 
>C. ELEGANS:183947_AT
ggagaaggtactttcgacaaggacgaagacatggccgacgcgctcttgaaaggattcgag
actattttcacaaaagaattcaattcgtttaacaaggacgaagacatggccgacgcgctc
ttgaaaggattcgagaccattttcacaaatgacaacttctatatatgtgttttcgacaga
aacgttcactgcgattatcacaccgtgaaacccgaaatgttgttcgtctcgacaaataac
ggaaagttcaacgtgatcatttctcgtgcatttgagcacaacgagtcgacatgtttgcaa
tatggggatatactggacaataacagggatcggaaaactagcggaggaaaccttttgcac
actttgacaactcttatgaaagagtaccttcgatcggcagtgatctcatctgcgaagaac
gagttcaagggatgctcgtactttttggcggttacttccagagatgtggctgtcagatgg
acgaaaaaaaatggggctcgtaagggtccaggaaccttcaattggcatggacaactgact
gttgtcaatctcttttatg

BLASTn GenBank NR
Probe Info
Probe Sequence(5'-3') Probe X Probe Y Probe Interrogation
Position 		Strandedness
GGAGAAGGTACTTTCGACAAGGACG 589 511 1021 Antisense
GCGATTATCACACCGTGAAACCCGA 671 289 1211 Antisense
GAAATGTTGTTCGTCTCGACAAATA 555 361 1234 Antisense
AGCGGAGGAAACCTTTTGCACACTT 411 81 1360 Antisense
TTTGCACACTTTGACAACTCTTATG 587 667 1374 Antisense
AAGAGTACCTTCGATCGGCAGTGAT 258 155 1400 Antisense
GATCGGCAGTGATCTCATCTGCGAA 183 419 1412 Antisense
TACTTTTTGGCGGTTACTTCCAGAG 471 643 1459 Antisense
GCTCGTAAGGGTCCAGGAACCTTCA 131 297 1516 Antisense
GGAACCTTCAATTGGCATGGACAAC 123 531 1531 Antisense
CTGACTGTTGTCAATCTCTTTTATG 688 237 1555 Antisense
Sequence Source Affymetrix Proprietary Database