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[183946_at]

Description T16A1.9 /REP_DB=WormBase Gene ID /WP=CE13718 /TR=P91450 /GB=AAB37878.1 /SUBMIT=ST.LOUIS /CHR=2 /FEA=Sanger Annotation
Cluster 6grp_total > 95      4grp_total > 35      6grp_total_sub > Increase      

Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 56
1 2 3 4 range
A 10.7
(-2.5)
A 		33.1
(3)
A 		8.7
(-3)
A 		13.8
(-1.7)
A 		24
B 20.1
(-0.5)
A 		30
(3)
A 		15
(-2.3)
A 		12.9
(-3)
A 		17
C 11.5
(-2.9)
A 		44.6
(0.8)
A 		10.3
(-3)
A 		64.6
(3)
A 		54
avr 14.1
(-2.3) 		35.9
(3) 		11.3
(-3) 		30.4
(1.7) 		25

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 34
1 2 3 4 5 6 range
A 6.2
(-1.8)
A 		2.1
(-3)
A 		16.9
(1.3)
A 		2.8
(-2.8)
A 		22.8
(3)
A 		2.2
(-3)
A 		21
B 5.4
(-2.5)
A 		2.8
(-3)
A 		3.5
(-2.9)
A 		35.8
(3)
A 		28.7
(1.7)
P 		18.8
(-0.1)
A 		33
C 7.9
(-1.9)
A 		6.7
(-2.2)
A 		11.8
(-0.9)
A 		3.6
(-3)
A 		5.3
(-2.6)
A 		26.6
(3)
A 		23
avr 6.5
(-2) 		3.9
(-3) 		10.7
(-0.3) 		14.1
(1.1) 		18.9
(3) 		15.9
(1.8) 		15
No Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 11
1 2 3 4 range
A 3.9
(-0.8)
A 		7.2
(3)
A 		2.3
(-2.7)
A 		2
(-3)
A 		5
B 6.4
(1.7)
A 		7.4
(3)
A 		3.5
(-2.1)
A 		2.8
(-3)
A 		5
C 3.8
(-2.9)
A 		12.8
(3)
A 		3.6
(-3)
A 		10.9
(1.8)
A 		9
avr 4.7
(-1.4) 		9.1
(3) 		3.1
(-3) 		5.2
(-0.9) 		6

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 11
1 2 3 4 5 6 range
A 1.1
(-2.4)
A 		0.7
(-2.8)
A 		3.7
(0)
A 		0.7
(-2.8)
A 		6.9
(3)
A 		0.5
(-3)
A 		6
B 1.9
(-2.4)
A 		0.9
(-3)
A 		0.9
(-3)
A 		9.5
(1.8)
A 		11.6
(3)
P 		7
(0.4)
A 		11
C 2.9
(-1.4)
A 		2
(-2)
A 		3
(-1.3)
A 		0.7
(-3)
A 		1.7
(-2.3)
A 		8.9
(3)
A 		8
avr 2
(-2.1) 		1.2
(-3) 		2.5
(-1.6) 		3.6
(-0.4) 		6.7
(3) 		5.5
(1.7) 		6
NetAffx Links Cluster Members
Consensus/Exemplar
GeneChip Array Information
Probe Set ID 183946_at
GeneChip Array C. elegans Genome Array
Organism Common Name Nematode
Probe Design Information
Transcript ID(Array Design) affy.Ce.5880
Sequence Type Exemplar sequence
Representative Public ID T16A1.9 NCBI
Target Description T16A1.9 /REP_DB=WormBase Gene ID /WP=CE13718 /TR=P91450 /GB=AAB37878.1 /SUBMIT=ST.LOUIS /CHR=2 /FEA=Sanger Annotation
Annotation Method Description
Annotation Description This probe set was annotated using the Matching Probes based pipeline to a RefSeq identifier using 1 transcript(s).
Annotation Grade This is a grade A annotation.
Annotation Transcript Cluster (# of Matching Probes) NM_061778(11)
Transcript Assignments
Representative
Transcript		 Description Matching Probes Related Probesets by Grade
NM_061778 NCBI Caenorhabditis elegans T16A1.9 (T16A1.9) mRNA, complete cds. 11/11 None
SNAP00000022093 ENSEMBL cdna:SNAP chromosome:CEL140:II:2094622:2095169:-1 9/11 None
T16A1.9 ENSEMBL cdna:known chromosome:CEL140:II:2094536:2095242:-1 gene:T16A1.9 11/11 None
Annotation Notes
There are no noteworthy cross hybridizing mRNAs found for this probe set.
Genomic Alignment of Consensus/Exemplar Sequence
Assembly Wormbase March 2004
Alignment(s)
Position Identity Coverage Cytoband
chrII:2094620-2095241(-) 100.0 100.0
Public Domain and Genome References
Gene Title
Ensembl T16A1.9
Entrez Gene 173565 Entrez gene
SwissProt P91450 EMBL-EBI
WormBase CE13718 Wormbase
Functional Annotations
Protein Similarities
Method ID Description E-Value
blast AAB37878 Hypothetical protein T16A1.9 [Caenorhabditis elegans] ref|NP_494179.1| T16A1.9 [Caenorhabditis elegans] 7.0E-57
blast AAB37878 Hypothetical protein T16A1.9 [Caenorhabditis elegans] ref|NP_494179.1| T16A1.9 [Caenorhabditis elegans] 3.0E-52
blast AAK52055 RNA-directed DNA polymerase [Drosophila melanogaster] 2.0E-11
blast AAA28600 reverse transcriptase endonuclease 5.0E-11
Protein Domains
Database ID Description E-Value
Pfam IPR000477 EMBL-EBI RNA-directed DNA polymerase (Reverse transcriptase) 2.1E-5
Pfam IPR000477 EMBL-EBI RNA-directed DNA polymerase (Reverse transcriptase) 2.1E-5
Sequence
Target Sequence 
>C. ELEGANS:183946_AT
atgggacatcctgaaaccacaaagtttcaccatttgtcaacaaaagtcaccatatctgtt
cctgaagaagaatgttacggctcgacgaatcgaacaagttttaatggtgaagacatcgaa
gaagtactggaagccatactcaaatcgggaatgaagctcaaaatggaaaaatccaatttt
ggacacgcaaagatcaagttcctaggatacattgtcttggaagaaggcatacagacagat
ccgaaaactattaaagctattgccaagtttcctcaaccggagaatg

BLASTn GenBank NR
Probe Info
Probe Sequence(5'-3') Probe X Probe Y Probe Interrogation
Position 		Strandedness
ATGGGACATCCTGAAACCACAAAGT 367 49 13 Antisense
CAAAGTTTCACCATTTGTCAACAAA 108 187 32 Antisense
AAAGTCACCATATCTGTTCCTGAAG 186 123 55 Antisense
AGAATGTTACGGCTCGACGAATCGA 552 71 81 Antisense
GACATCGAAGAAGTACTGGAAGCCA 119 369 124 Antisense
ACTGGAAGCCATACTCAAATCGGGA 702 95 138 Antisense
GACACGCAAAGATCAAGTTCCTAGG 46 367 194 Antisense
AAGTTCCTAGGATACATTGTCTTGG 602 155 208 Antisense
GAAGGCATACAGACAGATCCGAAAA 510 333 235 Antisense
AAAGCTATTGCCAAGTTTCCTCAAC 649 123 265 Antisense
GCCAAGTTTCCTCAACCGGAGAATG 324 273 274 Antisense
Sequence Source Affymetrix Proprietary Database