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[183945_at]

Description C25H3.9 /REP_DB=WormBase Gene ID /WP=CE27095 /TR=Q18185 /GB=AAK31457.1 /SUBMIT=ST.LOUIS /CHR=2 /FEA=Sanger Annotation
Cluster 6grp_total > 02      4grp_total > 27      

Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 9
1 2 3 4 range
A 8.2
(3)
A 		6.4
(-3)
A 		7.5
(0.7)
A 		7.6
(1)
A 		2
B 5.8
(-0.7)
A 		6.4
(0.2)
A 		8.1
(3)
A 		4.4
(-3)
A 		4
C 7.2
(-1.2)
A 		12.3
(2.6)
A 		4.7
(-3)
A 		12.9
(3)
A 		8
avr 7.1
(-1.9) 		8.4
(3) 		6.8
(-3) 		8.3
(2.6) 		2

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 3
1 2 3 4 5 6 range
A 6.3
(2.6)
A 		5.9
(1.7)
A 		4.8
(-0.6)
A 		3.9
(-2.6)
A 		6.5
(3)
A 		3.7
(-3)
A 		3
B 5.4
(1.1)
A 		5.9
(3)
A 		5.6
(1.9)
A 		5.2
(0.4)
A 		5.1
(-0)
A 		4.3
(-3)
A 		2
C 4.4
(-3)
A 		5.5
(0.7)
A 		5
(-1)
A 		5.8
(1.7)
A 		6.2
(3)
A 		5.3
(-0)
A 		2
avr 5.4
(1) 		5.8
(2.6) 		5.1
(-0.2) 		5
(-0.6) 		5.9
(3) 		4.4
(-3) 		2
No Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 3
1 2 3 4 range
A 3
(3)
A 		1.4
(-2.1)
A 		1.9
(-0.5)
A 		1.1
(-3)
A 		2
B 1.8
(2.4)
A 		1.6
(1.2)
A 		1.9
(3)
A 		0.9
(-3)
A 		1
C 2.4
(-0.5)
A 		3.5
(3)
A 		1.6
(-3)
A 		2.2
(-1.1)
A 		2
avr 2.4
(3) 		2.2
(1.8) 		1.8
(-0.6) 		1.4
(-3) 		1

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 1
1 2 3 4 5 6 range
A 1.2
(-1.5)
A 		2.1
(3)
A 		1
(-2.5)
A 		1
(-2.5)
A 		1.9
(2)
A 		0.9
(-3)
A 		1
B 1.9
(1.3)
A 		2
(2.1)
A 		1.4
(-3)
A 		1.4
(-3)
A 		2.1
(3)
A 		1.6
(-1.3)
A 		1
C 1.6
(0)
A 		1.7
(0.8)
A 		1.3
(-2.3)
A 		1.2
(-3)
A 		2
(3)
A 		1.8
(1.5)
A 		1
avr 1.6
(0) 		1.9
(2.3) 		1.2
(-3) 		1.2
(-3) 		2
(3) 		1.4
(-1.5) 		1
NetAffx Links Cluster Members
Consensus/Exemplar
GeneChip Array Information
Probe Set ID 183945_at
GeneChip Array C. elegans Genome Array
Organism Common Name Nematode
Probe Design Information
Transcript ID(Array Design) affy.Ce.4380
Sequence Type Exemplar sequence
Representative Public ID C25H3.9 NCBI
Target Description C25H3.9 /REP_DB=WormBase Gene ID /WP=CE27095 /TR=Q18185 /GB=AAK31457.1 /SUBMIT=ST.LOUIS /CHR=2 /FEA=Sanger Annotation
Annotation Method Description
Annotation Description This probe set was annotated using the Matching Probes based pipeline to a RefSeq identifier using 1 transcript(s).
Annotation Grade This is a grade A annotation.
Annotation Transcript Cluster (# of Matching Probes) NM_062711(11)
Transcript Assignments
Representative
Transcript		 Description Matching Probes Related Probesets by Grade
NM_062711 NCBI Caenorhabditis elegans C25H3.11 (C25H3.11) mRNA, complete cds. 11/11 None
SNAP00000016807 ENSEMBL cdna:SNAP chromosome:CEL140:II:5684447:5688872:-1 11/11 None
GENEFINDER00000016816 ENSEMBL cdna:GeneFinder chromosome:CEL140:II:5682837:5688872:-1 11/11 None
C25H3.11 ENSEMBL cdna:known chromosome:CEL140:II:5684447:5688872:-1 gene:C25H3.11 11/11 None
Annotation Notes
There are no noteworthy cross hybridizing mRNAs found for this probe set.
Genomic Alignment of Consensus/Exemplar Sequence
Assembly Wormbase March 2004
Alignment(s)
Position Identity Coverage Cytoband
chrII:5684443-5691280(-) 100.0 100.0
Public Domain and Genome References
Gene Title
Ensembl C25H3.11
Entrez Gene 182925 Entrez gene
SwissProt Q9BIA3 EMBL-EBI
WormBase CE27091 Wormbase
Functional Annotations
Protein Similarities
Method ID Description E-Value
blast AAK31456 Hypothetical protein C25H3.11 [Caenorhabditis elegans] ref|NP_495112.1| C25H3.11 [Caenorhabditis elegans] 0.0
blast T15628 hypothetical protein C25H3.9 - Caenorhabditis elegans 0.0
blast CAE59170 Hypothetical protein CBG02477 [Caenorhabditis briggsae] 0.0
Sequence
Target Sequence 
>C. ELEGANS:183945_AT
gaagagaactacgtccaactacaatatgggaaccaggagagccgattgcatgtttgaatg
ttgatgggctcaatttcaatgtggtttcaaaagaacaacacttgaccaacttgaaacttg
ctattgggcatatggaaatgagggatatgatcgagaatacatcatatccactattcacca
cttcatctcaagcctcacaaatgaaatcgatctcgaattcctgtccagatcttcataaaa
ctgaaaaaagtgttcctgctcggcaatcgaaatctcatcagaatcatcatattccaataa
tttcgtcttcggtaccagatgaatcatatgctgattatataaaacctttaaatctaacga
cgatgacaattacatctgccacgtcaattgacaatcacgcattgacaagtgcgccggcgc
ccccgattccgagtagagttatga

BLASTn GenBank NR
Probe Info
Probe Sequence(5'-3') Probe X Probe Y Probe Interrogation
Position 		Strandedness
GAAGAGAACTACGTCCAACTACAAT 392 337 2987 Antisense
GATGGGCTCAATTTCAATGTGGTTT 599 407 3049 Antisense
ATACATCATATCCACTATTCACCAC 118 25 3143 Antisense
CACTTCATCTCAAGCCTCACAAATG 266 197 3165 Antisense
AAATCGATCTCGAATTCCTGTCCAG 226 119 3190 Antisense
ATTCCTGTCCAGATCTTCATAAAAC 688 7 3203 Antisense
GTGTTCCTGCTCGGCAATCGAAATC 11 485 3236 Antisense
AATTTCGTCTTCGGTACCAGATGAA 702 173 3285 Antisense
ATTACATCTGCCACGTCAATTGACA 151 13 3355 Antisense
CACGCATTGACAAGTGCGCCGGCGC 633 199 3382 Antisense
CCCCCGATTCCGAGTAGAGTTATGA 130 1 3406 Antisense
Sequence Source Affymetrix Proprietary Database