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[183944_at]

Description C16C8.9 /REP_DB=WormBase Gene ID /WP=CE08220 /TR=P91047 /GB=AAB37849.1 /SUBMIT=ST.LOUIS /CHR=2 /FEA=Sanger Annotation
Cluster 6grp_total > 91      4grp_total > 19      

Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 122
1 2 3 4 range
A 39.3
(-3)
A 		60.7
(-0.8)
P 		40.2
(-2.9)
A 		96.7
(3)
P 		57
B 35.8
(-2.3)
A 		37.9
(-2.1)
A 		23.5
(-3)
A 		123.8
(3)
P 		100
C 68.8
(-0.8)
A 		62.1
(-1.1)
A 		23.4
(-3)
P 		145.2
(3)
P 		122
avr 48
(-1.8) 		53.6
(-1.4) 		29
(-3) 		121.9
(3) 		93

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 31
1 2 3 4 5 6 range
A 47.4
(2.4)
P 		36.7
(-1.4)
A 		32.1
(-3)
P 		46.6
(2.1)
A 		49
(3)
P 		42
(0.5)
A 		17
B 42.7
(-0.1)
P 		34.1
(-2.3)
P 		31.2
(-3)
P 		50.4
(1.8)
M 		55.4
(3)
P 		34
(-2.3)
P 		24
C 29.7
(-3)
A 		35.8
(-1.8)
P 		47.6
(0.5)
A 		60.4
(3)
A 		36.8
(-1.6)
A 		33.5
(-2.3)
A 		31
avr 39.9
(-1.4) 		35.5
(-3) 		37
(-2.5) 		52.5
(3) 		47.1
(1.1) 		36.5
(-2.6) 		17
No Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 21
1 2 3 4 range
A 14.3
(3)
A 		13.2
(1.3)
P 		10.5
(-3)
A 		14.2
(2.8)
P 		4
B 11.4
(-1.3)
A 		9.4
(-1.9)
A 		5.4
(-3)
A 		26.4
(3)
P 		21
C 22.8
(2.4)
A 		17.8
(0.5)
A 		8.1
(-3)
P 		24.5
(3)
P 		16
avr 16.2
(0.6) 		13.5
(-0.6) 		8
(-3) 		21.7
(3) 		14

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 16
1 2 3 4 5 6 range
A 8.7
(-1.7)
P 		13.1
(1.7)
A 		7
(-3)
P 		11.8
(0.7)
A 		14.8
(3)
P 		10.2
(-0.5)
A 		8
B 14.9
(-0.1)
P 		11.3
(-1.5)
P 		7.6
(-3)
P 		13.3
(-0.7)
M 		22.5
(3)
P 		12.7
(-0.9)
P 		15
C 11
(-2.5)
A 		10.9
(-3)
P 		12.1
(3)
A 		12.1
(3)
A 		11.9
(2)
A 		11.2
(-1.5)
A 		1
avr 11.5
(-0.9) 		11.8
(-0.7) 		8.9
(-3) 		12.4
(-0.2) 		16.4
(3) 		11.4
(-1) 		8
NetAffx Links Cluster Members
Consensus/Exemplar
GeneChip Array Information
Probe Set ID 183944_at
GeneChip Array C. elegans Genome Array
Organism Common Name Nematode
Probe Design Information
Transcript ID(Array Design) affy.Ce.5859
Sequence Type Exemplar sequence
Representative Public ID C16C8.9 NCBI
Target Description C16C8.9 /REP_DB=WormBase Gene ID /WP=CE08220 /TR=P91047 /GB=AAB37849.1 /SUBMIT=ST.LOUIS /CHR=2 /FEA=Sanger Annotation
Annotation Method Description
Annotation Description This probe set was annotated using the Matching Probes based pipeline to a RefSeq identifier using 1 transcript(s).
Annotation Grade This is a grade A annotation.
Annotation Transcript Cluster (# of Matching Probes) NM_062152(11)
Transcript Assignments
Representative
Transcript		 Description Matching Probes Related Probesets by Grade
NM_062152 NCBI Caenorhabditis elegans C16C8.9 (C16C8.9) mRNA, complete cds. 11/11 None
SNAP00000014788 ENSEMBL cdna:SNAP chromosome:CEL140:II:3462605:3463189:-1 11/11 None
GENEFINDER00000014796 ENSEMBL cdna:GeneFinder chromosome:CEL140:II:3462605:3463189:-1 11/11 None
C16C8.9 ENSEMBL cdna:known chromosome:CEL140:II:3462605:3463189:-1 gene:C16C8.9 11/11 None
Annotation Notes
There are no noteworthy cross hybridizing mRNAs found for this probe set.
Genomic Alignment of Consensus/Exemplar Sequence
Assembly Wormbase March 2004
Alignment(s)
Position Identity Coverage Cytoband
chrII:3462603-3463188(-) 100.0 100.0
Public Domain and Genome References
Gene Title
Ensembl C16C8.9
Entrez Gene 182676 Entrez gene
SwissProt P91047 EMBL-EBI
WormBase CE08220 Wormbase
Functional Annotations
Protein Similarities
Method ID Description E-Value
blast AAB37849 Hypothetical protein C16C8.9 [Caenorhabditis elegans] ref|NP_494553.1| C16C8.9 [Caenorhabditis elegans] 5.0E-80
blast AAB37850 Hypothetical protein C16C8.8 [Caenorhabditis elegans] ref|NP_494552.1| C16C8.8 [Caenorhabditis elegans] 3.0E-19
Sequence
Target Sequence 
>C. ELEGANS:183944_AT
ctcgtccacctcttgatgaatatgctacgtccactatttcacttcttgatcaatatgctt
ggcagaatgctgaacagttcttcacaaagttcatcaaaacggtgaagtctgggaatgttc
gcgaattggaggattctttattatggactatttatcacgacctctccgctgaaaagatga
tcagtgaattccatgattatccttacataaaaatcaacgacgcaagattgtcaggagacc
agattgagactaatgtacttttcctgcagcaacccagtgggcatgacattaaatataaat
taactggtttcattctaagcaaaaatctagcaggtcactatctcatgacttcta

BLASTn GenBank NR
Probe Info
Probe Sequence(5'-3') Probe X Probe Y Probe Interrogation
Position 		Strandedness
CTCGTCCACCTCTTGATGAATATGC 212 233 98 Antisense
GAATATGCTACGTCCACTATTTCAC 211 327 115 Antisense
CGTCCACTATTTCACTTCTTGATCA 672 245 125 Antisense
AACAGTTCTTCACAAAGTTCATCAA 640 135 170 Antisense
GAAGTCTGGGAATGTTCGCGAATTG 439 321 201 Antisense
TATGGACTATTTATCACGACCTCTC 402 653 239 Antisense
ACGACCTCTCCGCTGAAAAGATGAT 275 93 254 Antisense
GTGAATTCCATGATTATCCTTACAT 477 481 281 Antisense
GAGACTAATGTACTTTTCCTGCAGC 655 393 343 Antisense
TCCTGCAGCAACCCAGTGGGCATGA 87 593 359 Antisense
GCAGGTCACTATCTCATGACTTCTA 469 311 427 Antisense
Sequence Source Affymetrix Proprietary Database