[Home] | [Total List]

[183943_at]

Description C01F1.4 /REP_DB=WormBase Gene ID /WP=CE06745 /TR=Q17553 /GB=AAB00712.1 /SUBMIT=ST.LOUIS /CHR=2 /FEA=Sanger Annotation
Cluster 6grp_total > 49      4grp_total > 13      6grp_total_sub > Cup      

Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 334
1 2 3 4 range
A 190.3
(0.2)
A 		37.2
(-2.6)
A 		14.2
(-3)
A 		348.4
(3)
A 		334
B 205.1
(0.9)
A 		91.5
(-1.6)
A 		29.9
(-3)
A 		301
(3)
A 		271
C 170.4
(-0.5)
A 		90.1
(-2.4)
A 		67
(-3)
A 		317.6
(3)
P 		251
avr 188.6
(0.2) 		72.9
(-2.2) 		37
(-3) 		322.3
(3) 		285

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 196
1 2 3 4 5 6 range
A 207.8
(2.6)
A 		98.1
(-2.1)
A 		85.6
(-2.6)
A 		77.1
(-3)
A 		146.9
(0)
A 		215.9
(3)
A 		139
B 132.5
(-0.2)
A 		122.3
(-0.7)
A 		78.9
(-2.9)
A 		76.9
(-3)
A 		130.6
(-0.3)
A 		195.9
(3)
P 		119
C 137.8
(1)
A 		101.2
(-0.3)
A 		101.8
(-0.2)
A 		19.8
(-3)
A 		105.5
(-0.1)
A 		197.6
(3)
M 		178
avr 159.4
(1.2) 		107.2
(-1) 		88.8
(-1.7) 		57.9
(-3) 		127.7
(-0.1) 		203.1
(3) 		145
No Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 66
1 2 3 4 range
A 69.3
(3)
A 		8.1
(-2.6)
A 		3.7
(-3)
A 		51
(1.3)
A 		66
B 65.4
(3)
A 		22.6
(-1.4)
A 		6.9
(-3)
A 		64.2
(2.9)
A 		59
C 56.4
(3)
A 		25.9
(-2.5)
A 		23.3
(-3)
A 		53.5
(2.5)
P 		33
avr 63.7
(3) 		18.9
(-2.1) 		11.3
(-3) 		56.2
(2.1) 		52

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 69
1 2 3 4 5 6 range
A 38.3
(0.5)
A 		34.9
(-0.1)
A 		18.6
(-3)
A 		19.5
(-2.8)
A 		44.3
(1.5)
A 		52.6
(3)
A 		34
B 46.1
(-0)
A 		40.7
(-0.6)
A 		19.2
(-3)
A 		20.4
(-2.9)
A 		53.1
(0.8)
A 		73.1
(3)
P 		54
C 51.1
(1.6)
A 		30.9
(-0.4)
A 		25.9
(-0.9)
A 		4
(-3)
A 		34.1
(-0.1)
A 		66.1
(3)
M 		62
avr 45.2
(0.7) 		35.5
(-0.5) 		21.2
(-2.2) 		14.6
(-3) 		43.8
(0.6) 		63.9
(3) 		49
NetAffx Links Cluster Members
Consensus/Exemplar
GeneChip Array Information
Probe Set ID 183943_at
GeneChip Array C. elegans Genome Array
Organism Common Name Nematode
Probe Design Information
Transcript ID(Array Design) affy.Ce.5446
Sequence Type Exemplar sequence
Representative Public ID C01F1.4 NCBI
Target Description C01F1.4 /REP_DB=WormBase Gene ID /WP=CE06745 /TR=Q17553 /GB=AAB00712.1 /SUBMIT=ST.LOUIS /CHR=2 /FEA=Sanger Annotation
Annotation Method Description
Annotation Description This probe set was annotated using the Matching Probes based pipeline to a RefSeq identifier using 1 transcript(s).
Annotation Grade This is a grade A annotation.
Annotation Transcript Cluster (# of Matching Probes) NM_062350(11)
Transcript Assignments
Representative
Transcript		 Description Matching Probes Related Probesets by Grade
NM_062350 NCBI Caenorhabditis elegans C01F1.4 (C01F1.4) mRNA, complete cds. 11/11 None
SNAP00000028112 ENSEMBL cdna:SNAP chromosome:CEL140:II:4276324:4279119:1 11/11 None
GENEFINDER00000028122 ENSEMBL cdna:GeneFinder chromosome:CEL140:II:4276207:4279119:1 11/11 None
C01F1.4 ENSEMBL cdna:known chromosome:CEL140:II:4276207:4279119:1 gene:C01F1.4 11/11 None
Annotation Notes
There are no noteworthy cross hybridizing mRNAs found for this probe set.
Genomic Alignment of Consensus/Exemplar Sequence
Assembly Wormbase March 2004
Alignment(s)
Position Identity Coverage Cytoband
chrII:4276205-4279118(+) 100.0 100.0
Public Domain and Genome References
Gene Title
Ensembl C01F1.4
Entrez Gene 182068 Entrez gene
SwissProt Q17553 EMBL-EBI
WormBase CE06745 Wormbase
Functional Annotations
Gene Ontology
GO Biological Process (view graph)
ID Description Evidence Links
7186 G-protein coupled receptor protein signaling pathway inferred from electronic annotation QuickGO AmiGO
GO Cellular Component (view graph)
ID Description Evidence Links
16021 integral to membrane inferred from electronic annotation QuickGO AmiGO
GO Molecular Function (view graph)
ID Description Evidence Links
1584 rhodopsin-like receptor activity inferred from electronic annotation QuickGO AmiGO
Protein Similarities
Method ID Description E-Value
blast AAB00712 Hypothetical protein C01F1.4 [Caenorhabditis elegans] ref|NP_494751.1| C01F1.4 [Caenorhabditis elegans] 1.0E-178
blast AAB00712 Hypothetical protein C01F1.4 [Caenorhabditis elegans] ref|NP_494751.1| C01F1.4 [Caenorhabditis elegans] 1.0E-154
blast CAE60112 Hypothetical protein CBG03650 [Caenorhabditis briggsae] 1.0E-142
blast CAE60112 Hypothetical protein CBG03650 [Caenorhabditis briggsae] 1.0E-126
blast CAB07217 Hypothetical protein H02I12.3 [Caenorhabditis elegans] ref|NP_502147.1| Temporarily Assigned Gene name family member (tag-89) [Caenorhabditis elegans] 6.0E-21
Protein Domains
Trans Membrane
ID Number Of Domains Domain Boundaries
NP_494751.1 7 10-32,45-67,87-109,129-151,171-193,224-246,261-283
C01F1.4 7 10-32,45-67,87-109,129-151,171-193,224-246,261-283
SNAP00000028112 6 7-29,52-70,90-112,132-154,185-207,222-244
GENEFINDER00000028122 7 10-32,45-67,87-109,129-151,171-193,224-246,261-283
Sequence
Target Sequence 
>C. ELEGANS:183943_AT
gcaacaccgccaatggctcttatgatctatttcgccagcaattcgggacagggatatcaa
agcgagaaatgcatgggcatcaaattttacgagaacttctatttccgcgcacttgtctct
cttatcattgtctttctcatcattcttaccaccatcttctacatcaaaatgttacaaaaa
attaccgaggtccgtagcaaaaccgcttccaactcccaaaccctcggagcatctgcccgt
ggacggcgtacagttgtgactgcagttctgatcttcggaactttcctgatcgggtggatg
ccagcaagtatcctgtacatcttgactgcagaaagtatgcccctgtataataagcacagt
gtctcgataactatcatgtcgatcgccgtgctggtcagtattatggcgaagacgttgtgt
aatccaattatctatgcgacaagaatccctgaaatcaatcaattcgtgttccaaaagctg
ctctaccgc

BLASTn GenBank NR
Probe Info
Probe Sequence(5'-3') Probe X Probe Y Probe Interrogation
Position 		Strandedness
GCAACACCGCCAATGGCTCTTATGA 582 317 427 Antisense
CTATTTCGCCAGCAATTCGGGACAG 153 223 453 Antisense
TCATTGTCTTTCTCATCATTCTTAC 477 619 551 Antisense
TACCGAGGTCCGTAGCAAAACCGCT 368 647 609 Antisense
CTGCCCGTGGACGGCGTACAGTTGT 306 233 659 Antisense
GTGACTGCAGTTCTGATCTTCGGAA 347 483 682 Antisense
GAACTTTCCTGATCGGGTGGATGCC 448 349 704 Antisense
GTATCCTGTACATCTTGACTGCAGA 491 455 734 Antisense
GATAACTATCATGTCGATCGCCGTG 511 423 792 Antisense
GATCGCCGTGCTGGTCAGTATTATG 188 417 807 Antisense
CGTGTTCCAAAAGCTGCTCTACCGC 113 245 891 Antisense
Sequence Source Affymetrix Proprietary Database