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[183942_s_at]

Description T14B4.5 /REP_DB=WormBase Gene ID /WP=CE02048 /TR=Q22478 /GB=AAK31553.1 /SUBMIT=ST.LOUIS /CHR=2 /FEA=Sanger Annotation
Cluster 6grp_highest_10_10 > 05      6grp_high1_10_10 > 50      4grp_high_8_8 > 45      6grp_highest_nonorm > 52      6grp_total > 51      4grp_total > 50      6grp_highest_sub > 03_04      6grp_high1_sub > 03_04      6grp_total_sub > Hat      4grp_rule_based > L2      

Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 867
1 2 3 4 range
A 292.9
(-1.1)
P 		620.7
(3)
P 		557.7
(2.2)
P 		137.5
(-3)
P 		483
B 306.5
(-0.8)
P 		620.4
(3)
P 		489.6
(1.4)
P 		118.9
(-3)
P 		502
C 277.7
(-1.8)
P 		972.8
(3)
P 		806.4
(1.8)
P 		105.9
(-3)
M 		867
avr 292.4
(-1.3) 		738
(3) 		617.9
(1.8) 		120.8
(-3) 		617

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 900
1 2 3 4 5 6 range
A 843.6
(1.7)
P 		480.6
(-0.8)
P 		1043.3
(3)
P 		890.3
(2)
P 		448.5
(-1)
P 		143.8
(-3)
P 		900
B 817.6
(1.6)
P 		647.2
(0.2)
P 		997.7
(3)
P 		851.3
(1.8)
P 		540.9
(-0.6)
P 		239.6
(-3)
P 		758
C 842.5
(2.7)
P 		595.3
(0.4)
P 		858.1
(2.8)
P 		880.6
(3)
P 		389.2
(-1.5)
P 		225.7
(-3)
P 		655
avr 834.6
(2) 		574.4
(-0.1) 		966.4
(3) 		874.1
(2.3) 		459.5
(-1) 		203
(-3) 		763
No Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 263
1 2 3 4 range
A 106.6
(1.1)
P 		134.7
(2.5)
P 		145.8
(3)
P 		20.1
(-3)
P 		126
B 97.7
(0.4)
P 		153.2
(3)
P 		113.5
(1.1)
P 		25.3
(-3)
P 		128
C 91.9
(-1.3)
P 		279.7
(3)
P 		281.1
(3)
P 		17.8
(-3)
M 		263
avr 98.7
(-0.2) 		189.2
(3) 		180.1
(2.7) 		21.1
(-3) 		168

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 277
1 2 3 4 5 6 range
A 155.5
(0.8)
P 		170.9
(1.2)
P 		227.2
(3)
P 		225.8
(3)
P 		135.3
(0.1)
P 		35
(-3)
P 		192
B 284.5
(3)
P 		215.4
(0.9)
P 		242.3
(1.7)
P 		225.5
(1.2)
P 		219.8
(1)
P 		89.3
(-3)
P 		195
C 312.3
(3)
P 		181.7
(-0.3)
P 		218.4
(0.6)
P 		177.1
(-0.4)
P 		125.9
(-1.7)
P 		75.6
(-3)
P 		237
avr 250.8
(3) 		189.3
(1) 		229.3
(2.3) 		209.5
(1.7) 		160.3
(0.1) 		66.6
(-3) 		184
NetAffx Links Cluster Members
Consensus/Exemplar
Group Members
GeneChip Array Information
Probe Set ID 183942_s_at
GeneChip Array C. elegans Genome Array
Organism Common Name Nematode
Probe Design Information
Transcript ID(Array Design) affy.Ce.5856
Sequence Type Exemplar sequence
Representative Public ID T14B4.5 NCBI
Target Description T14B4.5 /REP_DB=WormBase Gene ID /WP=CE02048 /TR=Q22478 /GB=AAK31553.1 /SUBMIT=ST.LOUIS /CHR=2 /FEA=Sanger Annotation
Annotation Method Description
Annotation Description This probe set was annotated using the Matching Probes based pipeline to a RefSeq identifier using 1 transcript(s).
Annotation Grade This is a grade A annotation.
Annotation Transcript Cluster (# of Matching Probes) NM_062967(11)
Transcript Assignments
Representative
Transcript		 Description Matching Probes Related Probesets by Grade
NM_062967 NCBI Caenorhabditis elegans T14B4.5 (T14B4.5) mRNA, complete cds. 11/11 None
SNAP00000000075 ENSEMBL cdna:SNAP chromosome:CEL140:II:6716897:6717701:1 11/11 None
GENEFINDER00000000089 ENSEMBL cdna:GeneFinder chromosome:CEL140:II:6716897:6719919:1 10/11 None
T14B4.5 ENSEMBL cdna:known chromosome:CEL140:II:6716897:6717701:1 gene:T14B4.5 11/11 None
Annotation Notes
There are no noteworthy cross hybridizing mRNAs found for this probe set.
Genomic Alignment of Consensus/Exemplar Sequence
Assembly Wormbase March 2004
Alignment(s)
Position Identity Coverage Cytoband
chrII:6716893-6717698(+) 100.0 100.0
Public Domain and Genome References
Gene Title
Ensembl T14B4.5
Entrez Gene 174108 Entrez gene
SwissProt Q22478 EMBL-EBI
WormBase CE02048 Wormbase
Functional Annotations
Protein Similarities
Method ID Description E-Value
blast NP_495369 T14B4.4 [Caenorhabditis elegans] gb|AAK31552.1| Tetraspanin family protein 10 [Caenorhabditis elegans] 1.0E-115
blast CAE66036 Hypothetical protein CBG11232 [Caenorhabditis briggsae] 1.0E-92
blast NP_495368 T14B4.5 [Caenorhabditis elegans] gb|AAK31553.1| Hypothetical protein T14B4.5 [Caenorhabditis elegans] 3.0E-91
blast NP_495368 T14B4.5 [Caenorhabditis elegans] gb|AAK31553.1| Hypothetical protein T14B4.5 [Caenorhabditis elegans] 1.0E-77
blast CAE66035 Hypothetical protein CBG11231 [Caenorhabditis briggsae] 7.0E-77
Protein Domains
Database ID Description E-Value
Pfam IPR000301 EMBL-EBI CD9/CD37/CD63 antigen 1.4E-8
Trans Membrane
ID Number Of Domains Domain Boundaries
NP_495368.1 4 30-52,90-109,116-138,143-165
T14B4.5 4 30-52,90-109,116-138,143-165
SNAP00000000075 4 30-52,90-109,116-138,143-165
GENEFINDER00000000089 5 30-52,89-108,173-195,223-245,252-274
Sequence
Target Sequence 
>C. ELEGANS:183942_S_AT
ggcgctcccacgtattttggagcccgaagaagacggaattgttggaccatttgagcaaaa
agttagacatttattatcactaacattccgatttattttggcagtttttacggcttccca
tctatttgattttatgttttccagcatatggatgcatggatatgtatggacattaaatct
tccaatcgatttggatatgactgataaaccagctggagcacttgtaaagcatcaattgga
taacatgggtcatttagaaagaactattcaatctgttcttattgttttggcagttgttat
ggtcttattagctcaaggattcacacaaaaacctgggaaaaccacgtggcaattgttcaa
tacgtccgctgttgttggcttgatttgcggattcatcaggccagttcagatgcaacaaag
attattctctagtctgcacgaaggattttattgctattttatgttctttatcatctcatt
catttt

BLASTn GenBank NR
Probe Info
Probe Sequence(5'-3') Probe X Probe Y Probe Interrogation
Position 		Strandedness
GGCGCTCCCACGTATTTTGGAGCCC 175 543 15 Antisense
CTAACATTCCGATTTATTTTGGCAG 692 225 94 Antisense
TTTACGGCTTCCCATCTATTTGATT 404 673 121 Antisense
AAACCAGCTGGAGCACTTGTAAAGC 295 125 220 Antisense
GTTTTGGCAGTTGTTATGGTCTTAT 491 447 298 Antisense
GGGAAAACCACGTGGCAATTGTTCA 208 1 349 Antisense
CAATTGTTCAATACGTCCGCTGTTG 643 179 364 Antisense
GTCCGCTGTTGTTGGCTTGATTTGC 663 475 378 Antisense
GATTTGCGGATTCATCAGGCCAGTT 593 427 396 Antisense
GATTATTCTCTAGTCTGCACGAAGG 609 429 434 Antisense
TGTTCTTTATCATCTCATTCATTTT 216 563 476 Antisense
Sequence Source Affymetrix Proprietary Database