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[183941_s_at]

Description F56D3.1 /REP_DB=WormBase Gene ID /WP=CE02788 /TR=Q20877 /GB=AAA68355.1 /SUBMIT=ST.LOUIS /CHR=2 /FEA=Sanger Annotation
Cluster 6grp_highest_10_10 > 08      6grp_high1_10_10 > 80      4grp_highest_8_8 > 10      4grp_high_8_8 > 54      6grp_highest_nonorm > 43      6grp_total > 11      4grp_total > 57      6grp_high1_sub > 02_03_04_05      6grp_total_sub > Hat      4grp_rule_based > L3      

Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 2395
1 2 3 4 range
A 446.3
(-2.3)
P 		1944.6
(1.6)
P 		2499.1
(3)
P 		171.4
(-3)
P 		2328
B 518.2
(-1.9)
P 		2279.2
(3)
P 		2231.5
(2.9)
P 		104.3
(-3)
P 		2175
C 534.4
(-2.1)
P 		2345
(2.7)
P 		2454.8
(3)
P 		175.1
(-3)
P 		2280
avr 499.6
(-2.1) 		2189.6
(2.5) 		2395.1
(3) 		150.3
(-3) 		2245

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 1309
1 2 3 4 5 6 range
A 822
(-0.4)
P 		1550.6
(3)
P 		1020.5
(0.5)
P 		1191.8
(1.3)
P 		1309
(1.9)
P 		253.9
(-3)
P 		1297
B 881.3
(-0.2)
P 		1563.2
(3)
P 		878.4
(-0.3)
P 		1344.8
(2)
P 		1062.6
(0.6)
P 		303.8
(-3)
P 		1259
C 802
(-0.5)
P 		1523.7
(3)
P 		1081.6
(0.9)
P 		1013.8
(0.5)
P 		1180.5
(1.3)
P 		285.5
(-3)
P 		1238
avr 835.1
(-0.4) 		1545.8
(3) 		993.5
(0.4) 		1183.5
(1.3) 		1184
(1.3) 		281.1
(-3) 		1265
No Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 833
1 2 3 4 range
A 162.5
(-1.7)
P 		422.1
(0.8)
P 		653.3
(3)
P 		25.1
(-3)
P 		628
B 165.3
(-1.4)
P 		562.9
(3)
P 		517.1
(2.5)
P 		22.2
(-3)
P 		541
C 176.9
(-1.9)
P 		674.2
(1.7)
P 		855.6
(3)
P 		29.5
(-3)
P 		826
avr 168.2
(-1.7) 		553.1
(1.9) 		675.3
(3) 		25.6
(-3) 		650

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 490
1 2 3 4 5 6 range
A 151.5
(-1.9)
P 		551.5
(3)
P 		222.3
(-1)
P 		302.3
(-0.1)
P 		395
(1.1)
P 		61.8
(-3)
P 		490
B 306.7
(-0.1)
P 		520.3
(3)
P 		213.3
(-1.5)
P 		356.2
(0.6)
P 		431.7
(1.7)
P 		113.3
(-3)
P 		407
C 297.3
(0.3)
P 		464.9
(3)
P 		275.3
(-0.1)
P 		203.9
(-1.2)
P 		382
(1.7)
P 		95.6
(-3)
P 		369
avr 251.8
(-0.7) 		512.2
(3) 		237
(-0.9) 		287.5
(-0.2) 		402.9
(1.4) 		90.2
(-3) 		422
NetAffx Links Cluster Members
Consensus/Exemplar
Group Members
GeneChip Array Information
Probe Set ID 183941_s_at
GeneChip Array C. elegans Genome Array
Organism Common Name Nematode
Probe Design Information
Transcript ID(Array Design) affy.Ce.4270
Sequence Type Exemplar sequence
Representative Public ID F56D3.1 NCBI
Target Description F56D3.1 /REP_DB=WormBase Gene ID /WP=CE02788 /TR=Q20877 /GB=AAA68355.1 /SUBMIT=ST.LOUIS /CHR=2 /FEA=Sanger Annotation
Annotation Method Description
Annotation Description This probe set was annotated using the Matching Probes based pipeline to a RefSeq identifier using 1 transcript(s).
Annotation Grade This is a grade A annotation.
Annotation Transcript Cluster (# of Matching Probes) NM_062326(10)
Transcript Assignments
Representative
Transcript		 Description Matching Probes Related Probesets by Grade
NM_062326 NCBI Caenorhabditis elegans F56D3.1 (F56D3.1) mRNA, complete cds. 10/11 None
SNAP00000014079 ENSEMBL cdna:SNAP chromosome:CEL140:II:4146338:4149385:1 10/11 None
GENEFINDER00000014080 ENSEMBL cdna:GeneFinder chromosome:CEL140:II:4146338:4149389:1 10/11 None
F56D3.1.3 ENSEMBL cdna:known chromosome:CEL140:II:4142810:4149652:1 gene:F56D3.1 10/11 None
F56D3.1.2 ENSEMBL cdna:known chromosome:CEL140:II:4146331:4149653:1 gene:F56D3.1 10/11 None
F56D3.1.1 ENSEMBL cdna:known chromosome:CEL140:II:4146333:4149653:1 gene:F56D3.1 10/11 None
Annotation Notes
There are no noteworthy cross hybridizing mRNAs found for this probe set.
Genomic Alignment of Consensus/Exemplar Sequence
Assembly Wormbase March 2004
Alignment(s)
Position Identity Coverage Cytoband
chrII:4146336-4149388(+) 100.0 100.0
Public Domain and Genome References
Gene Title
Ensembl F56D3.1
Entrez Gene 173750 Entrez gene
SwissProt Q20877 EMBL-EBI
WormBase CE29410 Wormbase
Functional Annotations
Protein Similarities
Method ID Description E-Value
blast AAA68355 Hypothetical protein F56D3.1 [Caenorhabditis elegans] ref|NP_494727.1| F56D3.1 [Caenorhabditis elegans] 1.0E-171
blast AAA68355 Hypothetical protein F56D3.1 [Caenorhabditis elegans] ref|NP_494727.1| F56D3.1 [Caenorhabditis elegans] 1.0E-164
blast AAA68355 Hypothetical protein F56D3.1 [Caenorhabditis elegans] ref|NP_494727.1| F56D3.1 [Caenorhabditis elegans] 1.0E-161
blast CAE74282 Hypothetical protein CBG21978 [Caenorhabditis briggsae] 1.0E-127
blast CAE74282 Hypothetical protein CBG21978 [Caenorhabditis briggsae] 1.0E-121
Sequence
Target Sequence 
>C. ELEGANS:183941_S_AT
ttcagaccacagccaaactttgccacacgtccagctcaaccacagccagctccaactaca
ccagctccacgattcccaccacaatccggacagaacttgcgctccggacagtgccaggca
tcgatcttctacatttctactccgatcagcggaccatctcgtctcactttcactcatttc
gccgttgctgttacagttgatcagtgtgccagaacttgtcacgagttcaattgcgctagt
tgcaacccacactccggtcaccgaaaatcaggcggtaagttccacttttctattgacaag
tcgcataccgaagtaaagcaacgtccacaccgtgaaacaaaaaccgacgaagttgtcaca
tcggaacgttcgtcccaattg

BLASTn GenBank NR
Probe Info
Probe Sequence(5'-3') Probe X Probe Y Probe Interrogation
Position 		Strandedness
TTCAGACCACAGCCAAACTTTGCCA 403 685 721 Antisense
ACAATCCGGACAGAACTTGCGCTCC 515 113 801 Antisense
GGACAGTGCCAGGCATCGATCTTCT 518 525 826 Antisense
TCGATCTTCTACATTTCTACTCCGA 610 603 841 Antisense
TTTCTACTCCGATCAGCGGACCATC 602 671 854 Antisense
TCATTTCGCCGTTGCTGTTACAGTT 341 619 894 Antisense
GATCAGTGTGCCAGAACTTGTCACG 453 421 919 Antisense
CCACACTCCGGTCACCGAAAATCAG 702 275 967 Antisense
TCAGGCGGTAAGTTCCACTTTTCTA 248 621 988 Antisense
GTAAAGCAACGTCCACACCGTGAAA 287 461 1033 Antisense
CACATCGGAACGTTCGTCCCAATTG 507 195 1077 Antisense
Sequence Source Affymetrix Proprietary Database