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[183940_at]

Description F56D2.5 /REP_DB=WormBase Gene ID /WP=CE11232 /TR=Q20871 /GB=AAB52683.1 /SUBMIT=ST.LOUIS /CHR=3 /FEA=Sanger Annotation
Cluster 6grp_highest_10_10 > 12      6grp_high1_10_10 > 01      4grp_high_8_8 > 08      6grp_highest_nonorm > 90      6grp_total > 24      4grp_total > 15      6grp_high1_sub > De      6grp_total_sub > Decrease      

Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 157
1 2 3 4 range
A 204.7
(3)
P 		78.3
(-3)
P 		115.1
(-1.3)
P 		133.3
(-0.4)
P 		126
B 137.3
(2.5)
P 		63
(-3)
A 		104.2
(0)
P 		144.2
(3)
P 		81
C 219.9
(3)
P 		93.2
(-3)
P 		127.2
(-1.4)
P 		185.1
(1.4)
P 		127
avr 187.3
(3) 		78.2
(-3) 		115.5
(-0.9) 		154.2
(1.2) 		109

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 146
1 2 3 4 5 6 range
A 189.4
(3)
P 		159.8
(1.5)
P 		173
(2.2)
P 		136
(0.2)
P 		73.1
(-3)
P 		91.8
(-2)
P 		116
B 219.1
(3)
P 		122.8
(-1.3)
P 		145.4
(-0.3)
P 		112
(-1.8)
P 		86
(-3)
P 		101.5
(-2.3)
P 		133
C 189.4
(3)
P 		123.3
(-0.8)
P 		153.4
(0.9)
P 		158
(1.2)
P 		84.2
(-3)
P 		90.5
(-2.6)
P 		105
avr 199.3
(3) 		135.3
(-0.2) 		157.3
(0.9) 		135.3
(-0.2) 		81.1
(-3) 		94.6
(-2.3) 		118
No Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 59
1 2 3 4 range
A 74.5
(3)
P 		17
(-3)
P 		30.1
(-1.6)
P 		19.5
(-2.7)
P 		58
B 43.8
(3)
P 		15.6
(-3)
A 		24.1
(-1.2)
P 		30.7
(0.2)
P 		28
C 72.8
(3)
P 		26.8
(-3)
P 		44.3
(-0.7)
P 		31.2
(-2.4)
P 		46
avr 63.7
(3) 		19.8
(-3) 		32.8
(-1.2) 		27.1
(-2) 		44

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 54
1 2 3 4 5 6 range
A 34.9
(-0.8)
P 		56.8
(3)
P 		37.7
(-0.3)
P 		34.5
(-0.9)
P 		22.1
(-3)
P 		22.4
(-2.9)
P 		35
B 76.2
(3)
P 		40.9
(-1.6)
P 		35.3
(-2.3)
P 		29.7
(-3)
P 		35
(-2.3)
P 		37.9
(-1.9)
P 		47
C 70.2
(3)
P 		37.6
(-1.5)
P 		39
(-1.4)
P 		31.8
(-2.4)
P 		27.2
(-3)
P 		30.3
(-2.6)
P 		43
avr 60.4
(3) 		45.1
(0.2) 		37.3
(-1.3) 		32
(-2.3) 		28.1
(-3) 		30.2
(-2.6) 		32
NetAffx Links Cluster Members
Consensus/Exemplar
GeneChip Array Information
Probe Set ID 183940_at
GeneChip Array C. elegans Genome Array
Organism Common Name Nematode
Probe Design Information
Transcript ID(Array Design) affy.Ce.7209
Sequence Type Exemplar sequence
Representative Public ID F56D2.5 NCBI
Target Description F56D2.5 /REP_DB=WormBase Gene ID /WP=CE11232 /TR=Q20871 /GB=AAB52683.1 /SUBMIT=ST.LOUIS /CHR=3 /FEA=Sanger Annotation
Annotation Method Description
Annotation Description This probe set was annotated using the Matching Probes based pipeline to a RefSeq identifier using 1 transcript(s).
Annotation Grade This is a grade A annotation.
Annotation Transcript Cluster (# of Matching Probes) NM_065795(11)
Transcript Assignments
Representative
Transcript		 Description Matching Probes Related Probesets by Grade
NM_065795 NCBI Caenorhabditis elegans F56D2.5 (F56D2.5) mRNA, complete cds. 11/11 None
SNAP00000013285 ENSEMBL cdna:SNAP chromosome:CEL140:III:5578553:5581021:-1 11/11 None
GENEFINDER00000013298 ENSEMBL cdna:GeneFinder chromosome:CEL140:III:5578577:5581021:-1 11/11 None
F56D2.5 ENSEMBL cdna:known chromosome:CEL140:III:5578388:5581173:-1 gene:F56D2.5 11/11 None
Annotation Notes
There are no noteworthy cross hybridizing mRNAs found for this probe set.
Genomic Alignment of Consensus/Exemplar Sequence
Assembly Wormbase March 2004
Alignment(s)
Position Identity Coverage Cytoband
chrIII:5578551-5581020(-) 100.0 100.0
Public Domain and Genome References
Gene Title
Ensembl F56D2.5
Entrez Gene 186378 Entrez gene
SwissProt Q20871 EMBL-EBI
WormBase CE11232 Wormbase
Functional Annotations
Ortholog
ID Title Organism
ATH1-121501:260690_AT zinc finger (C3HC4-type RING finger) family protein at
CANINE_2:CFA.19861.1.S1_S_AT similar to RING finger protein 14 (Androgen receptor-associated protein 54) (Triad2 protein) (HFB30) cfa
CANINE_2:CFA.19861.2.S1_A_AT similar to RING finger protein 14 (Androgen receptor-associated protein 54) (Triad2 protein) (HFB30) cfa
CANINE_2:CFA.2062.1.S1_AT similar to RING finger protein 14 (Androgen receptor-associated protein 54) (Triad2 protein) (HFB30) cfa
CHICKEN:GGA.17494.1.S1_AT ring finger protein 14 gga
CHICKEN:GGAAFFX.11700.1.S1_S_AT ring finger protein 14 gga
HG-U133A:201823_S_AT ring finger protein 14 hs
HG-U133_PLUS_2:201823_S_AT ring finger protein 14 hs
HG-FOCUS:201823_S_AT ring finger protein 14 hs
HG-U133A_2:201823_S_AT ring finger protein 14 hs
HG-U133_PLUS_2:201824_AT ring finger protein 14 hs
HG-U133A:201824_AT ring finger protein 14 hs
HG-U133A_2:201824_AT ring finger protein 14 hs
HU35KSUBA:RC_AA448471_AT ring finger protein 14 hs
HU35KSUBA:RC_AA418072_AT ring finger protein 14 hs
U133_X3P:G5019617_3P_AT ring finger protein 14 hs
U133_X3P:G4757761_3P_A_AT ring finger protein 14 hs
HG-U95AV2:33343_AT ring finger protein 14 hs
HG-U133_PLUS_2:243345_AT Ring finger protein 14 hs
HG-U133B:243345_AT Ring finger protein 14 hs
HU35KSUBC:RC_C21426_AT Ring finger protein 14 hs
U133_X3P:HS.170926.0.A1_3P_AT Ring finger protein 14 hs
MOE430A:1425929_A_AT ring finger protein 14 mm
MOUSE430_2:1425929_A_AT ring finger protein 14 mm
MOUSE430A_2:1425929_A_AT ring finger protein 14 mm
MOUSE430A_2:1431030_A_AT ring finger protein 14 mm
MOE430A:1431030_A_AT ring finger protein 14 mm
MOUSE430_2:1431030_A_AT ring finger protein 14 mm
MOUSE430_2:1437035_X_AT ring finger protein 14 mm
MOE430A:1437035_X_AT ring finger protein 14 mm
MOUSE430A_2:1437035_X_AT ring finger protein 14 mm
MU11KSUBA:AA189316_S_AT ring finger protein 14 mm
MG-U74AV2:93958_AT ring finger protein 14 mm
MG-U74AV2:94066_AT ring finger protein 14 mm
MG-U74BV2:113431_AT ring finger protein 14 mm
MOE430A:1422429_AT ring finger protein 14 mm
MOUSE430A_2:1422429_AT ring finger protein 14 mm
MOUSE430_2:1422429_AT ring finger protein 14 mm
MU19KSUBC:TC36872_AT ring finger protein 14 mm
Protein Similarities
Method ID Description E-Value
blast AAB52683 Hypothetical protein F56D2.5 [Caenorhabditis elegans] ref|NP_498196.1| F56D2.5 [Caenorhabditis elegans] 0.0
blast CAE64302 Hypothetical protein CBG08978 [Caenorhabditis briggsae] 1.0E-168
blast AAB52681 Hypothetical protein F56D2.2 [Caenorhabditis elegans] ref|NP_498200.1| F56D2.2 [Caenorhabditis elegans] 1.0E-168
Protein Domains
Database ID Description E-Value
Pfam IPR006575 EMBL-EBI RWD 1.5E-28
Pfam IPR002867 EMBL-EBI Zn-finger, cysteine-rich C6HC 2.2E-28
Pfam IPR002867 EMBL-EBI Zn-finger, cysteine-rich C6HC 0.0068
Sequence
Target Sequence 
>C. ELEGANS:183940_AT
tctaactgacagccaacgcaaccttgttgaatgctcctattgcaattattctttctgcaa
tttgtgcaaaggaacgttccatggagtctcaaggtgtaaatttagaaaagaagacgagga
gagaataatgaaagaatggaatgaagcagatgaagcaggaaaagaagaaatgtataaacg
gtatggagagaagaacatgaaggctctggaggaacgattccttaatcgtggatggctgga
ggagaacagcaagcagtgtccgaaatgtttagtgtacattgagaaggacgaaggatgcaa
taagatgcattgtacaaaatgtaatgcctcgttctgttggttgtgctctaaaactctgaa
taatgtggatccatacagtcattactcggagaagggatcttgcaacggacgttta

BLASTn GenBank NR
Probe Info
Probe Sequence(5'-3') Probe X Probe Y Probe Interrogation
Position 		Strandedness
TCTAACTGACAGCCAACGCAACCTT 557 611 861 Antisense
GCAACCTTGTTGAATGCTCCTATTG 76 321 878 Antisense
GCTCCTATTGCAATTATTCTTTCTG 64 299 893 Antisense
GGAACGTTCCATGGAGTCTCAAGGT 323 529 931 Antisense
GAAGGCTCTGGAGGAACGATTCCTT 605 333 1059 Antisense
GATTCCTTAATCGTGGATGGCTGGA 520 433 1076 Antisense
GGAGAACAGCAAGCAGTGTCCGAAA 516 519 1101 Antisense
GTAATGCCTCGTTCTGTTGGTTGTG 105 463 1181 Antisense
GTTGGTTGTGCTCTAAAACTCTGAA 538 435 1196 Antisense
GTGGATCCATACAGTCATTACTCGG 361 489 1225 Antisense
GAAGGGATCTTGCAACGGACGTTTA 584 331 1251 Antisense
Sequence Source Affymetrix Proprietary Database