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[183939_at]

Description F36H5.5 /REP_DB=WormBase Gene ID /WP=CE09962 /TR=P91296 /GB=AAK31516.1 /SUBMIT=ST.LOUIS /CHR=2 /FEA=Sanger Annotation
Cluster 6grp_total > 82      4grp_total > 32      

Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 47
1 2 3 4 range
A 48
(-1.5)
A 		36.6
(-3)
A 		83.5
(3)
A 		80.4
(2.6)
A 		47
B 38.9
(-3)
A 		45.6
(-2.1)
A 		81.9
(3)
A 		80.9
(2.9)
A 		43
C 42.2
(-2.7)
A 		78.2
(3)
A 		60.1
(0.1)
A 		40.1
(-3)
A 		38
avr 43
(-3) 		53.5
(-1) 		75.2
(3) 		67.1
(1.5) 		32

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 69
1 2 3 4 5 6 range
A 9.3
(-3)
A 		50.1
(0.7)
A 		76
(3)
A 		23.8
(-1.7)
A 		48.6
(0.5)
A 		52.1
(0.9)
A 		67
B 78.7
(3)
A 		46.8
(-0.6)
A 		30.3
(-2.5)
A 		70.3
(2)
A 		70.8
(2.1)
A 		25.8
(-3)
A 		53
C 29.3
(-3)
A 		66.8
(2.5)
A 		59.2
(1.4)
A 		69.9
(3)
A 		60.7
(1.6)
A 		38.3
(-1.7)
A 		41
avr 39.1
(-2.9) 		54.6
(1.5) 		55.2
(1.6) 		54.7
(1.5) 		60
(3) 		38.7
(-3) 		21
No Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 16
1 2 3 4 range
A 17.5
(1.1)
A 		8
(-3)
A 		21.8
(3)
A 		11.8
(-1.3)
A 		14
B 12.4
(-2.1)
A 		11.3
(-3)
A 		19
(3)
A 		17.2
(1.6)
A 		8
C 14
(-0.2)
A 		22.5
(3)
A 		21
(2.4)
A 		6.8
(-3)
A 		16
avr 14.6
(-1.1) 		13.9
(-1.6) 		20.6
(3) 		11.9
(-3) 		9

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 27
1 2 3 4 5 6 range
A 1.7
(-3)
A 		17.8
(3)
A 		16.6
(2.6)
A 		6
(-1.4)
A 		14.7
(1.8)
A 		12.7
(1.1)
A 		16
B 27.4
(2.6)
A 		15.6
(-0.7)
A 		7.4
(-3)
A 		18.6
(0.1)
A 		28.8
(3)
A 		9.6
(-2.4)
A 		21
C 10.8
(-3)
A 		20.4
(3)
A 		15.1
(-0.3)
A 		14.1
(-0.9)
A 		19.6
(2.5)
A 		12.8
(-1.8)
A 		10
avr 13.3
(-2) 		17.9
(1) 		13
(-2.2) 		12.9
(-2.2) 		21
(3) 		11.7
(-3) 		9
NetAffx Links Cluster Members
Consensus/Exemplar
GeneChip Array Information
Probe Set ID 183939_at
GeneChip Array C. elegans Genome Array
Organism Common Name Nematode
Probe Design Information
Transcript ID(Array Design) affy.Ce.5480
Sequence Type Exemplar sequence
Representative Public ID F36H5.5 NCBI
Target Description F36H5.5 /REP_DB=WormBase Gene ID /WP=CE09962 /TR=P91296 /GB=AAK31516.1 /SUBMIT=ST.LOUIS /CHR=2 /FEA=Sanger Annotation
Annotation Method Description
Annotation Description This probe set was annotated using the Matching Probes based pipeline to a RefSeq identifier using 1 transcript(s).
Annotation Grade This is a grade A annotation.
Annotation Transcript Cluster (# of Matching Probes) NM_061670(11)
Transcript Assignments
Representative
Transcript		 Description Matching Probes Related Probesets by Grade
NM_061670 NCBI Caenorhabditis elegans F36H5.5 (F36H5.5) mRNA, complete cds. 11/11 None
GENEFINDER00000028530 ENSEMBL cdna:GeneFinder chromosome:CEL140:II:1759905:1762840:1 11/11 None
F36H5.5 ENSEMBL cdna:known chromosome:CEL140:II:1758331:1760670:1 gene:F36H5.5 11/11 None
Annotation Notes
Cross Hybridizing mRNA Matched Probes Nature of Assignment Related Probesets by Grade
SNAP00000028521 4/11 Cross Hyb Matching Probes None
Genomic Alignment of Consensus/Exemplar Sequence
Assembly Wormbase March 2004
Alignment(s)
Position Identity Coverage Cytoband
chrII:1758329-1760669(+) 100.0 100.0
Public Domain and Genome References
Gene Title
Ensembl F36H5.5
Entrez Gene 185384 Entrez gene
SwissProt P91296 EMBL-EBI
WormBase CE09962 Wormbase
Functional Annotations
Protein Similarities
Method ID Description E-Value
blast AAK31516 Hypothetical protein F36H5.5 [Caenorhabditis elegans] ref|NP_494071.1| F36H5.5 [Caenorhabditis elegans] 0.0
blast AAK31515 Hypothetical protein F36H5.4 [Caenorhabditis elegans] ref|NP_494072.1| F36H5.4 [Caenorhabditis elegans] 1.0E-155
blast AAK31516 Hypothetical protein F36H5.5 [Caenorhabditis elegans] ref|NP_494071.1| F36H5.5 [Caenorhabditis elegans] 1.0E-112
blast AAM98051 Hypothetical protein C08F1.10 [Caenorhabditis elegans] ref|NP_872027.1| C08F1.10 [Caenorhabditis elegans] 2.0E-66
blast AAB95027 Hypothetical protein K05F6.7 [Caenorhabditis elegans] ref|NP_493995.1| K05F6.7 [Caenorhabditis elegans] 2.0E-53
blast AAC67475 Hypothetical protein F58E1.14 [Caenorhabditis elegans] ref|NP_494048.1| F58E1.14 [Caenorhabditis elegans] 8.0E-50
Protein Domains
Database ID Description E-Value
Pfam IPR001810 EMBL-EBI Cyclin-like F-box 2.3E-5
Trans Membrane
ID Number Of Domains Domain Boundaries
NP_494071.1 6 366-388,403-422,442-464,474-496,516-533,548-570
F36H5.5 6 366-388,403-422,442-464,474-496,516-533,548-570
GENEFINDER00000028530 11 27-49,70-89,104-126,133-150,170-192,204-226,262-284,300-322,327-349,371-390,405-427
Sequence
Target Sequence 
>C. ELEGANS:183939_AT
tacctatctatttctcgctatcgaagctgtccaatgcctttgctttatccatttcgcgta
cccggagcacaaaactcctcaagctgctctcagtgagttcttcgcagatcctcttcaaat
tgttgggaccattttgcttgcgggtgttggagcgtttttgctcgatcggttatttttcaa
cagaaagcagtatacaattagaagcttctgtgcaaagcggtatctgatggcaacagcgat
gatcagcttggctattttgctcccagtacatagcattattggcctgtactgcgattggac
agaaaacatcatgtcggttgtaatccaatttatcgcaggatatttggtcttcaatctggt
agaccaactgtatgaactacatgcaccggtttactacgaattgtcggaaaataccaagat
caccactgctcaaaaagcttccatggttctgtttctcgtcatctccgagatcttttacat
aggccttagcttcctcga

BLASTn GenBank NR
Probe Info
Probe Sequence(5'-3') Probe X Probe Y Probe Interrogation
Position 		Strandedness
TACCTATCTATTTCTCGCTATCGAA 399 649 1116 Antisense
ATCGAAGCTGTCCAATGCCTTTGCT 442 35 1135 Antisense
CCTTTGCTTTATCCATTTCGCGTAC 176 269 1152 Antisense
TTCGCGTACCCGGAGCACAAAACTC 108 695 1168 Antisense
ACTCCTCAAGCTGCTCTCAGTGAGT 196 99 1189 Antisense
TCAGTGAGTTCTTCGCAGATCCTCT 455 623 1205 Antisense
TGATCAGCTTGGCTATTTTGCTCCC 330 565 1355 Antisense
GAACTACATGCACCGGTTTACTACG 547 349 1489 Antisense
AAATACCAAGATCACCACTGCTCAA 202 117 1524 Antisense
AAAAAGCTTCCATGGTTCTGTTTCT 178 127 1547 Antisense
TTTACATAGGCCTTAGCTTCCTCGA 383 673 1589 Antisense
Sequence Source Affymetrix Proprietary Database