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[183937_s_at]

Description T21C12.3 /REP_DB=WormBase Gene ID /WP=CE26725 /TR=Q22634 /GB=CAA90316.2 /SUBMIT=HINXTON /CHR=3 /FEA=Sanger Annotation
Cluster 6grp_highest_10_10 > 06      6grp_high1_10_10 > 20      4grp_high_8_8 > 10      6grp_highest_nonorm > 80      6grp_total > 40      4grp_total > 22      6grp_highest_sub > 04      6grp_total_sub > Hat      

Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 692
1 2 3 4 range
A 465.9
(0.6)
P 		253.8
(-1.8)
P 		150
(-3)
A 		669.8
(3)
P 		520
B 799.8
(3)
P 		223.1
(-2)
P 		114
(-3)
P 		649.3
(1.7)
P 		686
C 565.9
(3)
P 		177.4
(-2.1)
P 		107.8
(-3)
A 		475.6
(1.8)
P 		458
avr 610.5
(3) 		218.1
(-1.8) 		123.9
(-3) 		598.2
(2.8) 		487

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 130
1 2 3 4 5 6 range
A 240.8
(2.1)
P 		180
(-0.7)
P 		259.5
(3)
P 		246.7
(2.4)
P 		129.1
(-3)
P 		164.6
(-1.4)
P 		130
B 179.7
(-1.4)
P 		224.5
(3)
P 		179.2
(-1.5)
P 		209.2
(1.5)
P 		170.5
(-2.3)
P 		163.9
(-3)
P 		61
C 157.4
(-2.1)
P 		208.2
(3)
P 		181.7
(0.3)
P 		193.6
(1.5)
P 		148.6
(-3)
P 		167.4
(-1.1)
P 		60
avr 192.6
(0.9) 		204.2
(1.9) 		206.8
(2.1) 		216.5
(3) 		149.4
(-3) 		165.3
(-1.6) 		67
No Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 229
1 2 3 4 range
A 169.6
(3)
P 		55.1
(-2.3)
P 		39.2
(-3)
A 		98
(-0.3)
P 		130
B 255.1
(3)
P 		55.1
(-2.2)
P 		26.4
(-3)
P 		138.4
(-0.1)
P 		229
C 187.3
(3)
P 		51
(-2.5)
P 		37.6
(-3)
A 		80.2
(-1.3)
P 		150
avr 204
(3) 		53.7
(-2.3) 		34.4
(-3) 		105.5
(-0.5) 		170

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 36
1 2 3 4 5 6 range
A 44.4
(-1.7)
P 		64
(3)
P 		56.5
(1.2)
P 		62.6
(2.7)
P 		39
(-3)
P 		40.1
(-2.7)
P 		25
B 62.5
(0.7)
P 		74.7
(3)
P 		43.5
(-3)
P 		55.4
(-0.7)
P 		69.3
(2)
P 		61.1
(0.4)
P 		31
C 58.4
(1.8)
P 		63.5
(3)
P 		46.2
(-1.2)
P 		38.9
(-3)
P 		48.1
(-0.8)
P 		56
(1.2)
P 		25
avr 55.1
(-0.9) 		67.4
(3) 		48.7
(-3) 		52.3
(-1.8) 		52.1
(-1.9) 		52.4
(-1.8) 		19
NetAffx Links Cluster Members
Consensus/Exemplar
Group Members
GeneChip Array Information
Probe Set ID 183937_s_at
GeneChip Array C. elegans Genome Array
Organism Common Name Nematode
Probe Design Information
Transcript ID(Array Design) affy.Ce.7622
Sequence Type Exemplar sequence
Representative Public ID T21C12.3 NCBI
Target Description T21C12.3 /REP_DB=WormBase Gene ID /WP=CE26725 /TR=Q22634 /GB=CAA90316.2 /SUBMIT=HINXTON /CHR=3 /FEA=Sanger Annotation
Annotation Method Description
Annotation Description This probe set was annotated using the Genome Target Overlap based pipeline to a RefSeq identifier using 1 transcript(s).
Annotation Grade This is a grade B annotation.
Annotation Transcript Cluster (# of Matching Probes) NM_066924
Transcript Assignments
Representative
Transcript		 Description Matching Probes Related Probesets by Grade
T21C12.3 ENSEMBL cdna:known chromosome:CEL140:III:10537957:10539042:-1 gene:T21C12.3 None
NM_066924 NCBI Caenorhabditis elegans T21C12.3 (T21C12.3) mRNA, complete cds. None
SNAP00000038801 ENSEMBL cdna:SNAP chromosome:CEL140:III:10538577:10539040:-1 None
GENEFINDER00000038812 ENSEMBL cdna:GeneFinder chromosome:CEL140:III:10538577:10539040:-1 None
Annotation Notes
There are no noteworthy cross hybridizing mRNAs found for this probe set.
Genomic Alignment of Consensus/Exemplar Sequence
Assembly Wormbase March 2004
Alignment(s)
Position Identity Coverage Cytoband
chrIII:10538204-10539117(-) 100.0 100.0
Public Domain and Genome References
Gene Title
Ensembl T21C12.3
Entrez Gene 176474 Entrez gene
SwissProt Q22634 EMBL-EBI
WormBase CE26725 Wormbase
Functional Annotations
Protein Similarities
Method ID Description E-Value
blast CAA90316 Hypothetical protein T21C12.3 [Caenorhabditis elegans] ref|NP_499325.1| T21C12.3 [Caenorhabditis elegans] gb|AAG50219.1| 3K628 [Caenorhabditis elegans] sp|Q22634|YW60_CAEEL Hypothetical protein T21C12.3 in chromosome III 3.0E-70
blast T25066 hypothetical protein T21C12.3 - Caenorhabditis elegans 3.0E-70
blast CAA90316 Hypothetical protein T21C12.3 [Caenorhabditis elegans] ref|NP_499325.1| T21C12.3 [Caenorhabditis elegans] gb|AAG50219.1| 3K628 [Caenorhabditis elegans] sp|Q22634|YW60_CAEEL Hypothetical protein T21C12.3 in chromosome III 4.0E-63
blast T25066 hypothetical protein T21C12.3 - Caenorhabditis elegans 4.0E-63
blast CAE71450 Hypothetical protein CBG18362 [Caenorhabditis briggsae] 2.0E-40
Sequence
Target Sequence 
>C. ELEGANS:183937_S_AT
tgcccttctctataactattcttgtactcgtttcatactccgaatcagcctatttcaatt
ctcaactctcacaattccagatgctgttggttttattgttcagcctgttctctgtcggat
tcggtatgcgcgtgatgcgtcgtgaactgctcaaagatcaaccgacggtacttcttctgg
gtcccctggaggttctcacttcctcctcctccgaagacgacactcccgatttcccatcac
tccgcgataaacgaggcgtcgatccgatgagcattccgcggctcatcaaagaaccgccgt
tgaagaagcggagcggggattttaaacgaggtgacgtcgtctatccgtcggctgccaaac
agacggttccgctggttcgtgtgagggagccacctcttaagaggggacaaatgttccttg
aagagctactccagttcaatgatgacgcccacagacaa

BLASTn GenBank NR
Probe Info
Probe Sequence(5'-3') Probe X Probe Y Probe Interrogation
Position 		Strandedness
TGCCCTTCTCTATAACTATTCTTGT 237 585 14 Antisense
ATTCTTGTACTCGTTTCATACTCCG 566 11 31 Antisense
TCATACTCCGAATCAGCCTATTTCA 631 619 46 Antisense
TTTATTGTTCAGCCTGTTCTCTGTC 54 675 105 Antisense
GTTCTCTGTCGGATTCGGTATGCGC 101 443 120 Antisense
CGTGATGCGTCGTGAACTGCTCAAA 363 245 144 Antisense
TCAACCGACGGTACTTCTTCTGGGT 97 631 171 Antisense
CGTCGATCCGATGAGCATTCCGCGG 34 247 270 Antisense
TCTATCCGTCGGCTGCCAAACAGAC 703 611 353 Antisense
AAACAGACGGTTCCGCTGGTTCGTG 285 119 370 Antisense
GTTCAATGATGACGCCCACAGACAA 655 445 447 Antisense
Sequence Source Affymetrix Proprietary Database