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[183936_at]

Description W08F4.7 /REP_DB=WormBase Gene ID /WP=CE14724 /TR=O02107 /GB=AAC71176.1 /SUBMIT=ST.LOUIS /CHR=2 /FEA=Sanger Annotation
Cluster 6grp_total > 36      4grp_total > 10      6grp_total_sub > Cup      

Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 91
1 2 3 4 range
A 1.9
(-3)
A 		26.9
(-0.4)
A 		11.9
(-1.9)
A 		58.6
(3)
A 		57
B 8.2
(3)
A 		4.8
(-3)
A 		6.8
(0.5)
A 		7.6
(1.9)
A 		3
C 7.4
(-2.6)
A 		5.2
(-2.8)
A 		2
(-3)
A 		92.5
(3)
A 		91
avr 5.8
(-3) 		12.3
(-2.2) 		6.9
(-2.9) 		52.9
(3) 		47

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 18
1 2 3 4 5 6 range
A 7
(3)
A 		4.8
(0.5)
A 		6
(1.8)
A 		1.8
(-3)
A 		5.5
(1.3)
A 		6.2
(2.1)
A 		5
B 15
(1.1)
A 		19.9
(3)
A 		4.3
(-3)
A 		8.9
(-1.2)
A 		6.5
(-2.2)
A 		12.8
(0.3)
A 		16
C 4.2
(-0.5)
A 		7.2
(3)
A 		2.1
(-3)
A 		3.8
(-1)
A 		6.5
(2.2)
A 		3
(-1.9)
A 		5
avr 8.7
(1.2) 		10.6
(3) 		4.1
(-3) 		4.8
(-2.4) 		6.2
(-1.1) 		7.3
(-0) 		7
No Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 15
1 2 3 4 range
A 0.7
(-3)
A 		5.8
(0.9)
A 		3.1
(-1.2)
A 		8.6
(3)
A 		8
B 2.6
(3)
A 		1.2
(-3)
A 		1.6
(-1.3)
A 		1.6
(-1.3)
A 		1
C 2.4
(-2.3)
A 		1.5
(-2.7)
A 		0.7
(-3)
A 		15.6
(3)
A 		15
avr 1.9
(-2.9) 		2.8
(-2.1) 		1.8
(-3) 		8.6
(3) 		7

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 6
1 2 3 4 5 6 range
A 1.3
(1.2)
A 		1.7
(3)
A 		1.3
(1.2)
A 		0.4
(-3)
A 		1.7
(3)
A 		1.5
(2.1)
A 		1
B 5.2
(1.5)
A 		6.6
(3)
A 		1
(-3)
A 		2.3
(-1.6)
A 		2.6
(-1.3)
A 		4.8
(1.1)
A 		6
C 1.6
(0.9)
A 		2.2
(3)
A 		0.5
(-3)
A 		0.8
(-1.9)
A 		2.1
(2.6)
A 		1
(-1.2)
A 		2
avr 2.7
(1.2) 		3.5
(3) 		0.9
(-3) 		1.2
(-2.3) 		2.1
(-0.2) 		2.4
(0.5) 		3
NetAffx Links Cluster Members
Consensus/Exemplar
GeneChip Array Information
Probe Set ID 183936_at
GeneChip Array C. elegans Genome Array
Organism Common Name Nematode
Probe Design Information
Transcript ID(Array Design) affy.Ce.5297
Sequence Type Exemplar sequence
Representative Public ID W08F4.7 NCBI
Target Description W08F4.7 /REP_DB=WormBase Gene ID /WP=CE14724 /TR=O02107 /GB=AAC71176.1 /SUBMIT=ST.LOUIS /CHR=2 /FEA=Sanger Annotation
Annotation Method Description
Annotation Description This probe set was annotated using the Matching Probes based pipeline to a RefSeq identifier using 1 transcript(s).
Annotation Grade This is a grade A annotation.
Annotation Transcript Cluster (# of Matching Probes) NM_061359(11)
Transcript Assignments
Representative
Transcript		 Description Matching Probes Related Probesets by Grade
NM_061359 NCBI Caenorhabditis elegans W08F4.7 (W08F4.7) mRNA, complete cds. 11/11 None
SNAP00000029464 ENSEMBL cdna:SNAP chromosome:CEL140:II:574936:577697:-1 11/11 None
GENEFINDER00000029475 ENSEMBL cdna:GeneFinder chromosome:CEL140:II:575749:577730:-1 11/11 None
W08F4.7 ENSEMBL cdna:known chromosome:CEL140:II:576533:577730:-1 gene:W08F4.7 11/11 None
Annotation Notes
There are no noteworthy cross hybridizing mRNAs found for this probe set.
Genomic Alignment of Consensus/Exemplar Sequence
Assembly Wormbase March 2004
Alignment(s)
Position Identity Coverage Cytoband
chrII:576532-577730(-) 93.76 100.0
Public Domain and Genome References
Gene Title
Ensembl W08F4.7
Entrez Gene 189300 Entrez gene
WormBase CE14724 Wormbase
Functional Annotations
Protein Similarities
Method ID Description E-Value
blast AAC71176 Hypothetical protein W08F4.7 [Caenorhabditis elegans] 1.0E-122
blast AAC71176 Hypothetical protein W08F4.7 [Caenorhabditis elegans] 1.0E-98
blast NP_493760 W08F4.7 [Caenorhabditis elegans] 6.0E-75
blast AAC71176 Hypothetical protein W08F4.7 [Caenorhabditis elegans] 1.0E-64
blast NP_493760 W08F4.7 [Caenorhabditis elegans] 3.0E-64
blast CAE62903 Hypothetical protein CBG07093 [Caenorhabditis briggsae] 1.0E-60
blast NP_493760 W08F4.7 [Caenorhabditis elegans] 2.0E-57
blast CAE62903 Hypothetical protein CBG07093 [Caenorhabditis briggsae] 2.0E-47
Protein Domains
Trans Membrane
ID Number Of Domains Domain Boundaries
NP_493760.1 2 13-32,68-90
W08F4.7 2 13-32,68-90
Sequence
Target Sequence 
>C. ELEGANS:183936_AT
ggtaaattcgcggcttattctactagtttttgtcccattttccttggcacaattgagctt
gtatggaaattggaccccaactgtcattcgttactgtgagacgctccaatcagctacagt
acccctgactggaggtgtcacttgtggatcttcgtcgtataatgtgatgaatgctttttt
cacacttccaatcagttctacactttcacttggacttatcaatgtcggatggatcacctc
ggaag

BLASTn GenBank NR
Probe Info
Probe Sequence(5'-3') Probe X Probe Y Probe Interrogation
Position 		Strandedness
GGTAAATTCGCGGCTTATTCTACTA 295 503 48 Antisense
TATTCTACTAGTTTTTGTCCCATTT 461 663 63 Antisense
TCCCATTTTCCTTGGCACAATTGAG 134 599 80 Antisense
CCCCAACTGTCATTCGTTACTGTGA 193 261 122 Antisense
ACTGTGAGACGCTCCAATCAGCTAC 337 97 140 Antisense
AGTACCCCTGACTGGAGGTGTCACT 84 63 165 Antisense
TCACTTGTGGATCTTCGTCGTATAA 177 625 185 Antisense
GATGAATGCTTTTTTCACACTTCCA 62 413 213 Antisense
TTCACACTTCCAATCAGTTCTACAC 319 687 226 Antisense
AGTTCTACACTTTCACTTGGACTTA 179 65 241 Antisense
AATGTCGGATGGATCACCTCGGAAG 77 165 268 Antisense
Sequence Source Affymetrix Proprietary Database