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[183935_at]

Description R07C3.6 /REP_DB=WormBase Gene ID /WP=CE12532 /TR=O16771 /GB=AAB66236.1 /SUBMIT=ST.LOUIS /CHR=2 /FEA=Sanger Annotation
Cluster 6grp_total > 68      4grp_total > 01      6grp_total_sub > Increase      6grp_rule_based > S6      

Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 92
1 2 3 4 range
A 34.9
(-3)
P 		53.5
(-1.7)
P 		65.8
(-0.8)
M 		120.3
(3)
P 		85
B 55.5
(3)
M 		38.7
(-3)
A 		41.4
(-2)
A 		45.1
(-0.7)
A 		17
C 54.3
(0.2)
P 		28.7
(-3)
A 		36.2
(-2.1)
A 		76.1
(3)
P 		47
avr 48.2
(-1.8) 		40.3
(-3) 		47.8
(-1.9) 		80.5
(3) 		40

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 213
1 2 3 4 5 6 range
A 57.1
(-1.9)
A 		51.4
(-2.1)
P 		52.1
(-2.1)
P 		26.4
(-3)
A 		71.3
(-1.5)
M 		200.4
(3)
P 		174
B 54.6
(-1.5)
P 		26.5
(-2.4)
A 		25.9
(-2.4)
A 		5.5
(-3)
A 		80.9
(-0.7)
P 		205.1
(3)
P 		200
C 51.7
(-2.5)
P 		38.6
(-2.9)
P 		64.3
(-2.1)
P 		60
(-2.2)
A 		35.3
(-3)
A 		218.7
(3)
P 		183
avr 54.5
(-2.2) 		38.8
(-2.7) 		47.4
(-2.4) 		30.6
(-3) 		62.5
(-1.9) 		208.1
(3) 		178
No Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 10
1 2 3 4 range
A 12.7
(-1.9)
P 		11.6
(-3)
P 		17.2
(2.6)
M 		17.6
(3)
P 		6
B 17.7
(3)
M 		9.5
(-3)
A 		9.6
(-2.9)
A 		9.6
(-2.9)
A 		8
C 18
(3)
P 		8.2
(-3)
A 		12.6
(-0.3)
A 		12.8
(-0.2)
P 		10
avr 16.1
(3) 		9.8
(-3) 		13.1
(0.1) 		13.3
(0.3) 		6

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 75
1 2 3 4 5 6 range
A 10.5
(-2.5)
A 		18.3
(-1.3)
P 		11.3
(-2.3)
P 		6.7
(-3)
A 		21.5
(-0.9)
M 		48.8
(3)
P 		42
B 19
(-1.6)
P 		8.8
(-2.4)
A 		6.3
(-2.6)
A 		1.5
(-3)
A 		32.9
(-0.5)
P 		76.5
(3)
P 		75
C 19.2
(-2.2)
P 		11.8
(-3)
P 		16.4
(-2.5)
P 		12.1
(-2.9)
A 		11.4
(-3)
A 		73.2
(3)
P 		62
avr 16.2
(-2.1) 		13
(-2.4) 		11.3
(-2.5) 		6.8
(-3) 		21.9
(-1.5) 		66.2
(3) 		59
NetAffx Links Cluster Members
Consensus/Exemplar
GeneChip Array Information
Probe Set ID 183935_at
GeneChip Array C. elegans Genome Array
Organism Common Name Nematode
Probe Design Information
Transcript ID(Array Design) affy.Ce.5818
Sequence Type Exemplar sequence
Representative Public ID R07C3.6 NCBI
Target Description R07C3.6 /REP_DB=WormBase Gene ID /WP=CE12532 /TR=O16771 /GB=AAB66236.1 /SUBMIT=ST.LOUIS /CHR=2 /FEA=Sanger Annotation
Annotation Method Description
Annotation Description This probe set was annotated using the Matching Probes based pipeline to a RefSeq identifier using 1 transcript(s).
Annotation Grade This is a grade A annotation.
Annotation Transcript Cluster (# of Matching Probes) NM_061451(11)
Transcript Assignments
Representative
Transcript		 Description Matching Probes Related Probesets by Grade
NM_061451 NCBI Caenorhabditis elegans R07C3.6 (R07C3.6) mRNA, complete cds. 11/11 None
SNAP00000022240 ENSEMBL cdna:SNAP chromosome:CEL140:II:923894:925154:1 11/11 None
GENEFINDER00000022258 ENSEMBL cdna:GeneFinder chromosome:CEL140:II:923894:925154:1 11/11 None
R07C3.6 ENSEMBL cdna:known chromosome:CEL140:II:923894:925154:1 gene:R07C3.6 11/11 None
Annotation Notes
There are no noteworthy cross hybridizing mRNAs found for this probe set.
Genomic Alignment of Consensus/Exemplar Sequence
Assembly Wormbase March 2004
Alignment(s)
Position Identity Coverage Cytoband
chrII:923892-925153(+) 100.0 100.0
Public Domain and Genome References
Gene Title
Ensembl R07C3.6
Entrez Gene 187668 Entrez gene
SwissProt O16771 EMBL-EBI
WormBase CE12532 Wormbase
Functional Annotations
Protein Similarities
Method ID Description E-Value
blast AAB66236 Hypothetical protein R07C3.6 [Caenorhabditis elegans] ref|NP_493852.1| R07C3.6 [Caenorhabditis elegans] 0.0
blast AAB66237 Hypothetical protein R07C3.7 [Caenorhabditis elegans] ref|NP_493850.1| R07C3.7 [Caenorhabditis elegans] 9.0E-41
blast NP_493860 C32B5.10 [Caenorhabditis elegans] gb|AAB37966.1| Hypothetical protein C32B5.10 [Caenorhabditis elegans] 4.0E-37
Protein Domains
Database ID Description E-Value
scop a.2.7.Seryl-tRNA synthetase (SerRS) All alpha proteins; Long alpha-hairpin; tRNA-binding arm; Seryl-tRNA synthetase (SerRS) 2.90000009536743
Sequence
Target Sequence 
>C. ELEGANS:183935_AT
gagcagcttacctatgatcgaaaacttcatgatgctgttaagtatatcatggagaagctt
ttctgtggccgaaagactccggttcacctatctactttatcaatcaatagttttggaatt
ctacggattccattaaacatgagattcaagatccgacatctgaagctggtatctggtcat
gcaaatgaaatcgcaagcaaaattcggccgatcattgaagactcgagtttcccgttgaaa
tctataataatcaaggatccagtcgagtttgacgatccgatctaccactccacacaactc
ctcgttcttagacatcagcttgagaaccgatcaccaaggtttctaaacgtcaaagttctg
ccaaatcaattgtatgttacgactaaaatattgaattgggtacaacaagcccggccagtt
gggacatgttgggaatttgttggaattgataagaactcaaaaaggcagtgcgttcaaaaa
ctcatgcaaatacctggcgcgatgcgtgcattgcacacaaagttatgttggatcattcta
ccagcaaacgacgattcggaaatccacgtcactgtcg

BLASTn GenBank NR
Probe Info
Probe Sequence(5'-3') Probe X Probe Y Probe Interrogation
Position 		Strandedness
GAGCAGCTTACCTATGATCGAAAAC 513 387 550 Antisense
TGTGGCCGAAAGACTCCGGTTCACC 402 553 613 Antisense
GGTTCACCTATCTACTTTATCAATC 413 507 630 Antisense
GAAGCTGGTATCTGGTCATGCAAAT 562 341 711 Antisense
TGAAGACTCGAGTTTCCCGTTGAAA 658 571 765 Antisense
AACTCCTCGTTCTTAGACATCAGCT 394 141 845 Antisense
ACAAGCCCGGCCAGTTGGGACATGT 325 89 954 Antisense
AACTCATGCAAATACCTGGCGCGAT 56 141 1028 Antisense
TGGCGCGATGCGTGCATTGCACACA 402 545 1044 Antisense
GGATCATTCTACCAGCAAACGACGA 547 511 1079 Antisense
GATTCGGAAATCCACGTCACTGTCG 658 431 1102 Antisense
Sequence Source Affymetrix Proprietary Database