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[183934_s_at]

Description Y47D3B.9 /REP_DB=WormBase Gene ID /WP=CE19173 /TR=Q9XWZ9 /GB=CAA21044.1 /SUBMIT=HINXTON /CHR=3 /FEA=Sanger Annotation
Cluster 6grp_high1_10_10 > 17      4grp_highest_8_8 > 07      4grp_high_8_8 > 21      6grp_total > 18      4grp_total > 18      6grp_high1_sub > De      6grp_total_sub > Decrease      

Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 243
1 2 3 4 range
A 270.4
(-2.2)
P 		369.4
(0.4)
P 		241.8
(-3)
P 		470.2
(3)
P 		228
B 271.9
(-1.7)
P 		283.5
(-1.3)
P 		227.5
(-3)
P 		426.2
(3)
P 		199
C 238.8
(-3)
P 		302
(0.1)
P 		276.3
(-1.2)
P 		362
(3)
P 		123
avr 260.4
(-2.6) 		318.3
(-0.6) 		248.5
(-3) 		419.5
(3) 		171

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 170
1 2 3 4 5 6 range
A 228.6
(3)
P 		152.5
(-0.3)
P 		93
(-2.8)
M 		106.7
(-2.2)
P 		134.8
(-1)
P 		89.2
(-3)
A 		139
B 246.2
(3)
P 		172.6
(-0.4)
P 		115.4
(-3)
A 		131.2
(-2.3)
P 		125
(-2.6)
P 		122.2
(-2.7)
P 		131
C 259.5
(3)
P 		112.2
(-2.3)
P 		153
(-0.8)
P 		92.7
(-3)
A 		161.3
(-0.5)
P 		111
(-2.3)
P 		167
avr 244.8
(3) 		145.8
(-1.3) 		120.5
(-2.4) 		110.2
(-2.9) 		140.4
(-1.6) 		107.5
(-3) 		137
No Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 46
1 2 3 4 range
A 98.5
(3)
P 		80.2
(-0.1)
P 		63.2
(-3)
P 		68.8
(-2)
P 		35
B 86.7
(2.4)
P 		70
(-0.3)
P 		52.7
(-3)
P 		90.8
(3)
P 		38
C 79
(0.1)
P 		86.8
(1.4)
P 		96.3
(3)
P 		61
(-3)
P 		35
avr 88.1
(3) 		79
(-0.1) 		70.7
(-3) 		73.5
(-2) 		17

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 78
1 2 3 4 5 6 range
A 42.1
(0.9)
P 		54.2
(3)
P 		20.2
(-3)
M 		27.1
(-1.8)
P 		40.7
(0.6)
P 		21.7
(-2.7)
A 		34
B 85.7
(3)
P 		57.5
(0.1)
P 		28
(-3)
A 		34.7
(-2.3)
P 		50.8
(-0.6)
P 		45.6
(-1.2)
P 		58
C 96.2
(3)
P 		34.2
(-1.8)
P 		38.9
(-1.4)
P 		18.6
(-3)
A 		52.2
(-0.4)
P 		37.2
(-1.6)
P 		78
avr 74.7
(3) 		48.6
(-0.3) 		29
(-2.7) 		26.8
(-3) 		47.9
(-0.4) 		34.8
(-2) 		48
NetAffx Links Cluster Members
Consensus/Exemplar
Group Members
GeneChip Array Information
Probe Set ID 183934_s_at
GeneChip Array C. elegans Genome Array
Organism Common Name Nematode
Probe Design Information
Transcript ID(Array Design) affy.Ce.8016
Sequence Type Exemplar sequence
Representative Public ID Y47D3B.9 NCBI
Target Description Y47D3B.9 /REP_DB=WormBase Gene ID /WP=CE19173 /TR=Q9XWZ9 /GB=CAA21044.1 /SUBMIT=HINXTON /CHR=3 /FEA=Sanger Annotation
Annotation Method Description
Annotation Description This probe set was annotated using the Matching Probes based pipeline to a RefSeq identifier using 1 transcript(s).
Annotation Grade This is a grade A annotation.
Annotation Transcript Cluster (# of Matching Probes) NM_067073(11)
Transcript Assignments
Representative
Transcript		 Description Matching Probes Related Probesets by Grade
NM_067073 NCBI Caenorhabditis elegans Y47D3B.9 (Y47D3B.9) mRNA, complete cds. 11/11 None
SNAP00000004520 ENSEMBL cdna:SNAP chromosome:CEL140:III:11464047:11466617:-1 10/11 None
GENEFINDER00000004524 ENSEMBL cdna:GeneFinder chromosome:CEL140:III:11464047:11470681:-1 10/11 None
Y47D3B.9 ENSEMBL cdna:known chromosome:CEL140:III:11463541:11470681:-1 gene:Y47D3B.9 11/11 None
Annotation Notes
There are no noteworthy cross hybridizing mRNAs found for this probe set.
Genomic Alignment of Consensus/Exemplar Sequence
Assembly Wormbase March 2004
Alignment(s)
Position Identity Coverage Cytoband
chrIII:11463758-11470677(-) 98.69 100.0
Public Domain and Genome References
Gene Title
Ensembl Y47D3B.9
Entrez Gene 176576 Entrez gene
SwissProt Q9XWZ9 EMBL-EBI
WormBase CE19173 Wormbase
Functional Annotations
Gene Ontology
GO Molecular Function (view graph)
ID Description Evidence Links
3677 DNA binding inferred from electronic annotation QuickGO AmiGO
Protein Similarities
Method ID Description E-Value
blast CAA21044 Hypothetical protein Y47D3B.9 [Caenorhabditis elegans] ref|NP_499474.1| Y47D3B.9 [Caenorhabditis elegans] 0.0
blast CAE67708 Hypothetical protein CBG13281 [Caenorhabditis briggsae] 0.0
blast CAE67708 Hypothetical protein CBG13281 [Caenorhabditis briggsae] 1.0E-180
blast CAE74141 Hypothetical protein CBG21812 [Caenorhabditis briggsae] 3.0E-11
blast CAE74141 Hypothetical protein CBG21812 [Caenorhabditis briggsae] 6.0E-11
Protein Domains
Database ID Description E-Value
Pfam IPR003656 EMBL-EBI BED finger 2.5E-11
Pfam IPR003656 EMBL-EBI BED finger 9.3E-17
Pfam IPR003656 EMBL-EBI BED finger 9.3E-17
Sequence
Target Sequence 
>C. ELEGANS:183934_S_AT
tctctctaactccaatccaatgatgttcgcgatgctcaacgcggccggcaactcgacatc
ctcggcaccagcacctccaaaatcgagcacaagccaacaaagatccagctcaccaccatc
cgcgcacgacacatcgaatggttcaatgtcaccgtcaaaagtggacaaggatccatcgtc
gttctcactgagcgagggacactgtgccgctcagctcatgtcgatggcacttgacttgga
aatgacaatgtcctatcacaaacgacgatccgagattgagctgtgttttgagagcaatcg
gactgtcgatgagtcacagggagccgcttctcgaaaagttatatgtttgactgatcttgg
aaaggagatcaaaattacggaacgaataaacggaagcgtaaaagacacggaactttgggt
gaagacggatttcaatcaattccattgggcgatacgtggaaaatgtcaaaaatcagccga
cgcttcccgggttccgccacttgtagtgaaaccccgcag

BLASTn GenBank NR
Probe Info
Probe Sequence(5'-3') Probe X Probe Y Probe Interrogation
Position 		Strandedness
TCTCTCTAACTCCAATCCAATGATG 37 613 1671 Antisense
GATGTTCGCGATGCTCAACGCGGCC 162 411 1692 Antisense
CCAGCACCTCCAAAATCGAGCACAA 177 273 1738 Antisense
AGCCAACAAAGATCCAGCTCACCAC 610 83 1762 Antisense
TCCGCGCACGACACATCGAATGGTT 524 593 1789 Antisense
CATCGTCGTTCTCACTGAGCGAGGG 104 209 1844 Antisense
ACTGAGCGAGGGACACTGTGCCGCT 578 97 1857 Antisense
TGCCGCTCAGCTCATGTCGATGGCA 146 585 1875 Antisense
ACGATCCGAGATTGAGCTGTGTTTT 294 93 1935 Antisense
TCGATGAGTCACAGGGAGCCGCTTC 269 601 1976 Antisense
CGCCACTTGTAGTGAAACCCCGCAG 62 245 2165 Antisense
Sequence Source Affymetrix Proprietary Database