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[183933_at]

Description B0047.2 /REP_DB=WormBase Gene ID /WP=CE07674 /TR=O16565 /GB=AAB66042.1 /SUBMIT=ST.LOUIS /CHR=2 /FEA=Sanger Annotation
Cluster 6grp_total > 99      4grp_total > 17      6grp_total_sub > Increase      

Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 58
1 2 3 4 range
A 5.7
(-3)
A 		5.9
(-2.9)
A 		6.1
(-2.8)
A 		17.4
(3)
A 		12
B 5.2
(-3)
A 		44.1
(2)
A 		32.2
(0.5)
A 		52.1
(3)
A 		47
C 2.3
(-3)
A 		6.1
(-2.6)
A 		4
(-2.8)
A 		60.6
(3)
A 		58
avr 4.4
(-3) 		18.7
(-0.8) 		14.1
(-1.5) 		43.4
(3) 		39

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 45
1 2 3 4 5 6 range
A 28.1
(3)
A 		4.7
(-2.3)
A 		1.5
(-3)
A 		13.9
(-0.2)
A 		15.6
(0.2)
A 		10.1
(-1.1)
A 		27
B 3.8
(-1.9)
A 		6.4
(-0.8)
A 		4.6
(-1.5)
A 		2.7
(-2.3)
A 		0.9
(-3)
A 		16.1
(3)
A 		15
C 5.4
(-2.9)
A 		4.7
(-3)
A 		31.4
(0.9)
A 		6.4
(-2.8)
A 		45.5
(3)
A 		35.6
(1.5)
A 		41
avr 12.4
(-0.2) 		5.3
(-3) 		12.5
(-0.2) 		7.7
(-2.1) 		20.7
(3) 		20.6
(3) 		15
No Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 10
1 2 3 4 range
A 2.1
(0.7)
A 		1.3
(-3)
A 		1.6
(-1.6)
A 		2.6
(3)
A 		1
B 1.7
(-3)
A 		10.9
(2.9)
A 		7.5
(0.7)
A 		11.1
(3)
A 		9
C 0.7
(-3)
A 		1.8
(-2.3)
A 		1.4
(-2.6)
A 		10.2
(3)
A 		10
avr 1.5
(-3) 		4.7
(-0) 		3.5
(-1.2) 		8
(3) 		7

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 14
1 2 3 4 5 6 range
A 5.2
(3)
A 		1.7
(-1.3)
A 		0.3
(-3)
A 		3.5
(0.9)
A 		4.7
(2.4)
A 		2.4
(-0.4)
A 		5
B 1.3
(-2)
A 		2.1
(-1.2)
A 		1.1
(-2.3)
A 		0.7
(-2.7)
A 		0.4
(-3)
A 		6
(3)
A 		6
C 2
(-2.7)
A 		1.4
(-3)
A 		8
(0)
A 		1.3
(-3)
A 		14.7
(3)
A 		11.9
(1.7)
A 		13
avr 2.8
(-1.7) 		1.7
(-3) 		3.1
(-1.4) 		1.8
(-2.9) 		6.6
(2.8) 		6.8
(3) 		5
NetAffx Links Cluster Members
Consensus/Exemplar
GeneChip Array Information
Probe Set ID 183933_at
GeneChip Array C. elegans Genome Array
Organism Common Name Nematode
Probe Design Information
Transcript ID(Array Design) affy.Ce.5816
Sequence Type Exemplar sequence
Representative Public ID B0047.2 NCBI
Target Description B0047.2 /REP_DB=WormBase Gene ID /WP=CE07674 /TR=O16565 /GB=AAB66042.1 /SUBMIT=ST.LOUIS /CHR=2 /FEA=Sanger Annotation
Annotation Method Description
Annotation Description This probe set was annotated using the Matching Probes based pipeline to a RefSeq identifier using 1 transcript(s).
Annotation Grade This is a grade A annotation.
Annotation Transcript Cluster (# of Matching Probes) NM_061761(9)
Transcript Assignments
Representative
Transcript		 Description Matching Probes Related Probesets by Grade
NM_061761 NCBI Caenorhabditis elegans B0047.2 (B0047.2) mRNA, complete cds. 9/11 None
GENEFINDER00000006985 ENSEMBL cdna:GeneFinder chromosome:CEL140:II:2043090:2044088:-1 11/11 None
B0047.2 ENSEMBL cdna:known chromosome:CEL140:II:2043090:2044060:-1 gene:B0047.2 9/11 None
Annotation Notes
Cross Hybridizing mRNA Matched Probes Nature of Assignment Related Probesets by Grade
SNAP00000006976 7/11 Cross Hyb Matching Probes None
SNAP00000006977 3/11 Cross Hyb Matching Probes None
Genomic Alignment of Consensus/Exemplar Sequence
Assembly Wormbase March 2004
Alignment(s)
Position Identity Coverage Cytoband
chrII:2043088-2044087(-) 100.0 100.0
Public Domain and Genome References
Gene Title
Ensembl B0047.2
Entrez Gene 181825 Entrez gene
SwissProt O16565 EMBL-EBI
WormBase CE34627 Wormbase
Functional Annotations
Gene Ontology
GO Molecular Function (view graph)
ID Description Evidence Links
5515 protein binding inferred from electronic annotation QuickGO AmiGO
Protein Similarities
Method ID Description E-Value
blast AAB66042 Hypothetical protein B0047.2 [Caenorhabditis elegans] ref|NP_494162.2| B0047.2 [Caenorhabditis elegans] 2.0E-78
blast AAB66042 Hypothetical protein B0047.2 [Caenorhabditis elegans] ref|NP_494162.2| B0047.2 [Caenorhabditis elegans] 1.0E-68
blast AAF39860 Hypothetical protein F59H6.12 [Caenorhabditis elegans] ref|NP_494159.1| F59H6.12 [Caenorhabditis elegans] 6.0E-43
blast CAB05523 Hypothetical protein F57C2.1 [Caenorhabditis elegans] ref|NP_497016.1| F57C2.1 [Caenorhabditis elegans] 2.0E-41
blast CAB05524 Hypothetical protein F57C2.2 [Caenorhabditis elegans] ref|NP_497015.1| F57C2.2 [Caenorhabditis elegans] 5.0E-41
blast CAB05524 Hypothetical protein F57C2.2 [Caenorhabditis elegans] ref|NP_497015.1| F57C2.2 [Caenorhabditis elegans] 3.0E-39
Protein Domains
Database ID Description E-Value
Pfam IPR000210 EMBL-EBI BTB/POZ domain 4.3E-23
Pfam IPR000210 EMBL-EBI BTB/POZ domain 4.3E-23
Sequence
Target Sequence 
>C. ELEGANS:183933_AT
gatcaaacttgaactctattccggttttattaaagaaggaatttcaaaagaacatgaggt
ggatggtttcaaatgcttgtggagctatgcaaataacaaatcaacttggaaattcgactg
gtccggactgaagccattcggagtttcctctccttccattcggttttttttccgtaaact
tttcacatcgaaattcaaggaaagcaaaatgactgagatcccaatcaaggatgtttccta
cgaggactttggacttgtgatgagcacaatctacccggatacgatctttccaaatgacga
aactgccgagaaacttcttgaaatggctgatcgtttcctgatgccagttgtaaccaatat
tgtggagcatcatcttctctacaacagcaaactgccaaatgagaagatcattcgcttggc
agat

BLASTn GenBank NR
Probe Info
Probe Sequence(5'-3') Probe X Probe Y Probe Interrogation
Position 		Strandedness
GATCAAACTTGAACTCTATTCCGGT 208 421 27 Antisense
GAGGTGGATGGTTTCAAATGCTTGT 246 403 82 Antisense
AATTCGACTGGTCCGGACTGAAGCC 28 177 137 Antisense
GACTGAAGCCATTCGGAGTTTCCTC 259 375 152 Antisense
GGATGTTTCCTACGAGGACTTTGGA 136 509 255 Antisense
AGGACTTTGGACTTGTGATGAGCAC 567 55 269 Antisense
ATCTACCCGGATACGATCTTTCCAA 524 29 295 Antisense
TGATCGTTTCCTGATGCCAGTTGTA 47 567 354 Antisense
ATTGTGGAGCATCATCTTCTCTACA 309 5 385 Antisense
ATCTTCTCTACAACAGCAAACTGCC 575 31 398 Antisense
TGAGAAGATCATTCGCTTGGCAGAT 257 569 426 Antisense
Sequence Source Affymetrix Proprietary Database