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[183932_at]

Description F38E1.6 /REP_DB=WormBase Gene ID /WP=CE04524 /TR=Q20158 /GB=AAA83474.1 /SUBMIT=ST.LOUIS /CHR=5 /FEA=Sanger Annotation
Cluster 6grp_total > 63      4grp_total > 11      6grp_total_sub > Hat      

Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 84
1 2 3 4 range
A 24.8
(-1.4)
A 		30.8
(-0.9)
A 		4.3
(-3)
A 		81.5
(3)
A 		77
B 21.1
(-1.6)
A 		13.4
(-3)
A 		21.7
(-1.5)
A 		45.8
(3)
A 		32
C 28.1
(-1.2)
A 		18.7
(-1.9)
A 		3.1
(-3)
A 		87
(3)
P 		84
avr 24.7
(-1.5) 		21
(-1.9) 		9.7
(-3) 		71.4
(3) 		62

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 57
1 2 3 4 5 6 range
A 9
(-3)
A 		13.2
(-2.5)
A 		58
(3)
A 		33.5
(0)
A 		35.4
(0.2)
A 		30.8
(-0.3)
A 		49
B 13.8
(-2.1)
A 		10.6
(-3)
A 		25.8
(1.3)
A 		31.6
(3)
A 		15.6
(-1.6)
A 		11.9
(-2.6)
A 		21
C 20.9
(1.5)
A 		17.4
(0.7)
A 		8.1
(-1.3)
A 		2.9
(-2.5)
A 		27.6
(3)
A 		0.6
(-3)
A 		27
avr 14.6
(-2.7) 		13.7
(-3) 		30.6
(3) 		22.7
(0.2) 		26.2
(1.4) 		14.4
(-2.8) 		17
No Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 14
1 2 3 4 range
A 9
(1.4)
A 		6.7
(0.1)
A 		1.1
(-3)
A 		11.9
(3)
A 		11
B 6.7
(0.1)
A 		3.3
(-3)
A 		5
(-1.4)
A 		9.8
(3)
A 		7
C 9.3
(0.6)
A 		5.4
(-1.1)
A 		1.1
(-3)
A 		14.7
(3)
P 		14
avr 8.3
(0.6) 		5.1
(-1.3) 		2.4
(-3) 		12.1
(3) 		10

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 12
1 2 3 4 5 6 range
A 1.7
(-3)
A 		4.7
(-1.3)
A 		12.6
(3)
A 		8.5
(0.7)
A 		10.7
(2)
A 		7.5
(0.2)
A 		11
B 4.8
(-1.4)
A 		3.5
(-3)
A 		6.3
(0.4)
A 		8.4
(3)
A 		6.4
(0.6)
A 		4.4
(-1.9)
A 		5
C 7.7
(2.2)
A 		5.3
(0.5)
A 		2.1
(-1.7)
A 		0.6
(-2.7)
A 		8.9
(3)
A 		0.2
(-3)
A 		9
avr 4.7
(-2.1) 		4.5
(-2.4) 		7
(0.8) 		5.8
(-0.7) 		8.7
(3) 		4
(-3) 		5
NetAffx Links Cluster Members
Consensus/Exemplar
GeneChip Array Information
Probe Set ID 183932_at
GeneChip Array C. elegans Genome Array
Organism Common Name Nematode
Probe Design Information
Transcript ID(Array Design) affy.Ce.11540
Sequence Type Exemplar sequence
Representative Public ID F38E1.6 NCBI
Target Description F38E1.6 /REP_DB=WormBase Gene ID /WP=CE04524 /TR=Q20158 /GB=AAA83474.1 /SUBMIT=ST.LOUIS /CHR=5 /FEA=Sanger Annotation
Annotation Method Description
Annotation Description This probe set was annotated using the Matching Probes based pipeline to a RefSeq identifier using 1 transcript(s).
Annotation Grade This is a grade A annotation.
Annotation Transcript Cluster (# of Matching Probes) NM_072755(11)
Transcript Assignments
Representative
Transcript		 Description Matching Probes Related Probesets by Grade
NM_072755 NCBI Caenorhabditis elegans F38E1.6 (F38E1.6) mRNA, complete cds. 11/11 None
GENEFINDER00000006035 ENSEMBL cdna:GeneFinder chromosome:CEL140:V:8362682:8363984:1 11/11 None
F38E1.6 ENSEMBL cdna:known chromosome:CEL140:V:8362408:8363984:1 gene:F38E1.6 11/11 None
Annotation Notes
There are no noteworthy cross hybridizing mRNAs found for this probe set.
Genomic Alignment of Consensus/Exemplar Sequence
Assembly Wormbase March 2004
Alignment(s)
Position Identity Coverage Cytoband
chrV:8362408-8363985(+) 100.0 100.0
Public Domain and Genome References
Gene Title
Ensembl F38E1.6
Entrez Gene 185464 Entrez gene
SwissProt Q20158 EMBL-EBI
WormBase CE04524 Wormbase
Functional Annotations
Protein Similarities
Method ID Description E-Value
blast AAA83474 Hypothetical protein F38E1.6 [Caenorhabditis elegans] ref|NP_505156.1| F38E1.6 [Caenorhabditis elegans] 1.0E-139
blast AAA83474 Hypothetical protein F38E1.6 [Caenorhabditis elegans] ref|NP_505156.1| F38E1.6 [Caenorhabditis elegans] 1.0E-107
blast CAE66065 Hypothetical protein CBG11279 [Caenorhabditis briggsae] 1.0E-21
blast CAE66065 Hypothetical protein CBG11279 [Caenorhabditis briggsae] 2.0E-21
Protein Domains
Trans Membrane
ID Number Of Domains Domain Boundaries
NP_505156.1 7 34-56,71-90,103-120,124-146,158-177,219-241,267-289
F38E1.6 7 34-56,71-90,103-120,124-146,158-177,219-241,267-289
GENEFINDER00000006035 5 2-24,34-56,83-105,149-171,197-219
Sequence
Target Sequence 
>C. ELEGANS:183932_AT
gaacttcaatgcgctcattcatattcatattatattctggtgcttgccaactttgttata
tttcaagttttgaatcaaattatattatgggaaattgtgtacattacctttctcagagcc
acagtaattttggaagtcagatatggaatgaaaacagaaaacttgaaactatacatgaga
cgctttatcacagttctttttaccatttttcttataaatcacaccgttcgaatatttttt
catcgaatcgaagaagttacagataacgatatgaaagtacgagaactaggtattccatgt
gattctgaaaaaatttacataattgctgcatttgctggagactgtctaagacggattttg
ttaacgatagcagggctcaccagtttgataatcccgattctaataatgattattctgtca
atattcttaattatcgagttgcgaagttcatctgaaacattacaaaagactcaagaatct
tcaacacgccaaaactcagcagcacgagcacttcttttgtttctttgt

BLASTn GenBank NR
Probe Info
Probe Sequence(5'-3') Probe X Probe Y Probe Interrogation
Position 		Strandedness
GAACTTCAATGCGCTCATTCATATT 107 351 301 Antisense
TGGTGCTTGCCAACTTTGTTATATT 301 553 338 Antisense
TGTGTACATTACCTTTCTCAGAGCC 33 555 396 Antisense
GACGCTTTATCACAGTTCTTTTTAC 552 379 479 Antisense
TTTTCTTATAAATCACACCGTTCGA 665 673 507 Antisense
CTGCATTTGCTGGAGACTGTCTAAG 376 237 626 Antisense
GTTAACGATAGCAGGGCTCACCAGT 39 445 660 Antisense
GGCTCACCAGTTTGATAATCCCGAT 127 539 674 Antisense
GACTCAAGAATCTTCAACACGCCAA 503 373 768 Antisense
AAACTCAGCAGCACGAGCACTTCTT 597 125 792 Antisense
ACGAGCACTTCTTTTGTTTCTTTGT 89 93 804 Antisense
Sequence Source Affymetrix Proprietary Database