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[183931_at]

Description C47D12.4 /REP_DB=WormBase Gene ID /WP=CE20568 /TR=Q18669 /GB=CAA93768.1 /SUBMIT=HINXTON /CHR=2 /FEA=Sanger Annotation
Cluster 6grp_total > 86      4grp_total > 08      6grp_total_sub > Increase      

Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 32
1 2 3 4 range
A 2.9
(-3)
A 		8.6
(-1.9)
A 		3.5
(-2.9)
A 		33
(3)
A 		30
B 23.8
(3)
A 		9.2
(-3)
A 		17.9
(0.6)
A 		21.3
(2)
A 		15
C 4.1
(-2.7)
A 		2.3
(-3)
A 		24.7
(1.2)
A 		34.5
(3)
A 		32
avr 10.3
(-2.1) 		6.7
(-3) 		15.4
(-0.7) 		29.6
(3) 		23

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 27
1 2 3 4 5 6 range
A 7
(-1.8)
A 		1.9
(-2.9)
A 		8.3
(-1.5)
A 		1.6
(-3)
A 		3.6
(-2.5)
A 		27.8
(3)
A 		26
B 6.7
(-1.6)
A 		1.1
(-3)
A 		5
(-2)
A 		25.4
(3)
A 		14.8
(0.4)
A 		24.3
(2.7)
A 		24
C 3.1
(-1.9)
A 		1.5
(-2.7)
A 		2.7
(-2.1)
A 		1.6
(-2.7)
A 		13
(3)
A 		0.9
(-3)
A 		12
avr 5.6
(-1.5) 		1.5
(-3) 		5.3
(-1.6) 		9.5
(-0) 		10.5
(0.3) 		17.7
(3) 		16
No Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 8
1 2 3 4 range
A 1
(-2.8)
A 		1.9
(-1.5)
A 		0.9
(-3)
A 		4.8
(3)
A 		4
B 7.6
(3)
A 		2.3
(-3)
A 		4.1
(-1)
A 		4.5
(-0.5)
A 		5
C 1.4
(-2.5)
A 		0.7
(-3)
A 		8.6
(3)
A 		5.8
(0.9)
A 		8
avr 3.3
(-0) 		1.6
(-3) 		4.5
(2.1) 		5
(3) 		3

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 9
1 2 3 4 5 6 range
A 1.3
(-2.2)
A 		0.7
(-2.7)
A 		1.8
(-1.7)
A 		0.4
(-3)
A 		1.1
(-2.3)
A 		6.8
(3)
A 		6
B 2.3
(-1.7)
A 		0.4
(-3)
A 		1.2
(-2.4)
A 		6.7
(1.3)
A 		6
(0.9)
A 		9.1
(3)
A 		9
C 1.2
(-1.6)
A 		0.5
(-2.7)
A 		0.7
(-2.4)
A 		0.3
(-3)
A 		4.2
(3)
A 		0.3
(-3)
A 		4
avr 1.6
(-1.7) 		0.5
(-3) 		1.2
(-2.1) 		2.5
(-0.6) 		3.8
(1) 		5.4
(3) 		5
NetAffx Links Cluster Members
Consensus/Exemplar
GeneChip Array Information
Probe Set ID 183931_at
GeneChip Array C. elegans Genome Array
Organism Common Name Nematode
Probe Design Information
Transcript ID(Array Design) affy.Ce.3822
Sequence Type Exemplar sequence
Representative Public ID C47D12.4 NCBI
Target Description C47D12.4 /REP_DB=WormBase Gene ID /WP=CE20568 /TR=Q18669 /GB=CAA93768.1 /SUBMIT=HINXTON /CHR=2 /FEA=Sanger Annotation
Annotation Method Description
Annotation Description This probe set was annotated using the Matching Probes based pipeline to a RefSeq identifier using 1 transcript(s).
Annotation Grade This is a grade A annotation.
Annotation Transcript Cluster (# of Matching Probes) NM_064093(11)
Transcript Assignments
Representative
Transcript		 Description Matching Probes Related Probesets by Grade
NM_064093 NCBI Caenorhabditis elegans C47D12.4 (C47D12.4) mRNA, complete cds. 11/11 None
C47D12.4 ENSEMBL cdna:known chromosome:CEL140:II:11681479:11682711:1 gene:C47D12.4 11/11 None
Annotation Notes
Cross Hybridizing mRNA Matched Probes Nature of Assignment Related Probesets by Grade
SNAP00000023905 5/11 Cross Hyb Matching Probes None
GENEFINDER00000023922 2/11 Cross Hyb Matching Probes None
Genomic Alignment of Consensus/Exemplar Sequence
Assembly Wormbase March 2004
Alignment(s)
Position Identity Coverage Cytoband
chrII:11681475-11682708(+) 100.0 100.0
Public Domain and Genome References
Gene Title
Ensembl C47D12.4
Entrez Gene 183548 Entrez gene
SwissProt Q18669 EMBL-EBI
WormBase CE20568 Wormbase
Functional Annotations
Protein Similarities
Method ID Description E-Value
blast CAA93768 Hypothetical protein C47D12.4 [Caenorhabditis elegans] ref|NP_496494.1| C47D12.4 [Caenorhabditis elegans] 1.0E-175
blast CAB60352 Hypothetical protein Y46G5A.7 [Caenorhabditis elegans] ref|NP_496713.2| Y46G5A.7 [Caenorhabditis elegans] 1.0E-103
blast CAI79250 Hypothetical protein Y46G5A.39 [Caenorhabditis elegans] ref|NP_001022443.1| Y46G5A.39 [Caenorhabditis elegans] 3.0E-60
Protein Domains
Database ID Description E-Value
Pfam IPR001810 EMBL-EBI Cyclin-like F-box 5.7E-8
Sequence
Target Sequence 
>C. ELEGANS:183931_AT
catgcacgccgagattactttgaaataatcttccagacgttaactgcggacattaattta
tataagggtgagaaccaagaagatgtaaaaagagtatgcataaacctttatataaatgat
atttacaaagaggtggatactaagagattagttgcacttattgtaagaaaaaaaatatct
attaataatttgacgtttgacggaaaaaaaaaatcaaataaattgtttcggggtctgttc
aaaagtaaagcggcagatttgaaagtgagaacggtgcatgatattcaattgaatgatatt
aacttgatggtccattgctggcatgtggcattggctgggattaatttgaacagtgatcac
ttaaacgtactcctcaagaaatggaaggaaaacagcagtctggaatacttttgtgcaaga
gaaatggaatcgcctcttgaaaaaactatcattcttgaagggacaaactctagacaacga
tctgaggataatcggttttatagatttaagaattgcgaatttctcacaacatgcaacaat
ggaaaagaatctcacttaacaatttatg

BLASTn GenBank NR
Probe Info
Probe Sequence(5'-3') Probe X Probe Y Probe Interrogation
Position 		Strandedness
CATGCACGCCGAGATTACTTTGAAA 510 197 301 Antisense
ATCTTCCAGACGTTAACTGCGGACA 533 31 328 Antisense
TATTAATAATTTGACGTTTGACGGA 668 651 480 Antisense
GGGTCTGTTCAAAAGTAAAGCGGCA 616 497 531 Antisense
GAGAACGGTGCATGATATTCAATTG 154 393 567 Antisense
TGATATTAACTTGATGGTCCATTGC 27 559 594 Antisense
GATGGTCCATTGCTGGCATGTGGCA 588 407 606 Antisense
GGCATGTGGCATTGGCTGGGATTAA 76 535 620 Antisense
TCGCCTCTTGAAAAAACTATCATTC 191 599 730 Antisense
TTAAGAATTGCGAATTTCTCACAAC 671 683 806 Antisense
AAAGAATCTCACTTAACAATTTATG 22 123 844 Antisense
Sequence Source Affymetrix Proprietary Database