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[183930_at]

Description C17C3.9 /REP_DB=WormBase Gene ID /WP=CE04029 /TR=Q18052 /GB=AAK31425.1 /SUBMIT=ST.LOUIS /CHR=2 /FEA=Sanger Annotation
Cluster 6grp_total > 89      4grp_total > 04      

Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 60
1 2 3 4 range
A 17.3
(0.6)
A 		2
(-3)
A 		12.3
(-0.6)
A 		27.5
(3)
A 		26
B 23.9
(1.8)
A 		10.3
(-1.2)
A 		1.7
(-3)
A 		29.6
(3)
A 		28
C 17.3
(-3)
A 		27.2
(-1.7)
A 		21
(-2.5)
A 		62
(3)
P 		45
avr 19.5
(-1.3) 		13.2
(-2.7) 		11.7
(-3) 		39.7
(3) 		28

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 56
1 2 3 4 5 6 range
A 15.1
(-1.2)
A 		35.2
(3)
A 		23
(0.4)
A 		6.8
(-3)
A 		12.1
(-1.9)
A 		31.6
(2.2)
A 		28
B 4.8
(-2.7)
A 		9.7
(-2.1)
A 		1.7
(-3)
A 		2.8
(-2.9)
A 		57.6
(3)
P 		26
(-0.4)
A 		56
C 10
(-2.4)
A 		32.9
(0.4)
A 		5.2
(-3)
A 		5.4
(-3)
A 		27.6
(-0.3)
A 		54.5
(3)
P 		49
avr 10
(-2.1) 		25.9
(0.9) 		10
(-2.1) 		5
(-3) 		32.4
(2.1) 		37.4
(3) 		32
No Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 10
1 2 3 4 range
A 6.3
(3)
A 		0.4
(-3)
A 		3.2
(-0.2)
A 		4
(0.7)
A 		6
B 7.6
(3)
A 		2.5
(-1.3)
A 		0.4
(-3)
A 		6.3
(1.9)
A 		7
C 5.7
(-3)
A 		7.8
(-0.4)
A 		7.3
(-1)
A 		10.5
(3)
P 		5
avr 6.5
(2.3) 		3.6
(-3) 		3.6
(-3) 		6.9
(3) 		3

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 23
1 2 3 4 5 6 range
A 2.8
(-2.4)
A 		12.5
(3)
A 		5
(-1.2)
A 		1.7
(-3)
A 		3.7
(-1.9)
A 		7.7
(0.3)
A 		11
B 1.7
(-2.7)
A 		3.2
(-2.3)
A 		0.4
(-3)
A 		0.7
(-2.9)
A 		23.4
(3)
P 		9.7
(-0.6)
A 		23
C 3.7
(-2.1)
A 		10
(0.1)
A 		1.3
(-2.9)
A 		1.1
(-3)
A 		8.9
(-0.3)
A 		18.2
(3)
P 		17
avr 2.7
(-2.2) 		8.6
(1.1) 		2.2
(-2.4) 		1.2
(-3) 		12
(3) 		11.9
(2.9) 		11
NetAffx Links Cluster Members
Consensus/Exemplar
GeneChip Array Information
Probe Set ID 183930_at
GeneChip Array C. elegans Genome Array
Organism Common Name Nematode
Probe Design Information
Transcript ID(Array Design) affy.Ce.5776
Sequence Type Exemplar sequence
Representative Public ID C17C3.9 NCBI
Target Description C17C3.9 /REP_DB=WormBase Gene ID /WP=CE04029 /TR=Q18052 /GB=AAK31425.1 /SUBMIT=ST.LOUIS /CHR=2 /FEA=Sanger Annotation
Annotation Method Description
Annotation Description This probe set was annotated using the Matching Probes based pipeline to a RefSeq identifier using 1 transcript(s).
Annotation Grade This is a grade A annotation.
Annotation Transcript Cluster (# of Matching Probes) NM_062660(11)
Transcript Assignments
Representative
Transcript		 Description Matching Probes Related Probesets by Grade
NM_062660 NCBI Caenorhabditis elegans C17C3.9 (C17C3.9) mRNA, complete cds. 11/11 None
SNAP00000005282 ENSEMBL cdna:SNAP chromosome:CEL140:II:5531368:5532224:-1 9/11 None
GENEFINDER00000005300 ENSEMBL cdna:GeneFinder chromosome:CEL140:II:5531368:5533692:-1 11/11 None
C17C3.9 ENSEMBL cdna:known chromosome:CEL140:II:5531368:5532224:-1 gene:C17C3.9 11/11 None
Annotation Notes
There are no noteworthy cross hybridizing mRNAs found for this probe set.
Genomic Alignment of Consensus/Exemplar Sequence
Assembly Wormbase March 2004
Alignment(s)
Position Identity Coverage Cytoband
chrII:5531365-5532222(-) 100.0 100.0
Public Domain and Genome References
Gene Title
Ensembl C17C3.9
Entrez Gene 182718 Entrez gene
SwissProt Q18052 EMBL-EBI
WormBase CE34699 Wormbase
Functional Annotations
Protein Similarities
Method ID Description E-Value
blast AAK31425 Hypothetical protein C17C3.9 [Caenorhabditis elegans] ref|NP_495061.2| C17C3.9 [Caenorhabditis elegans] 2.0E-80
blast AAK31422 Helix loop helix protein 26 [Caenorhabditis elegans] ref|NP_495062.1| Helix Loop Helix family member (hlh-26) [Caenorhabditis elegans] 2.0E-80
blast AAK31425 Hypothetical protein C17C3.9 [Caenorhabditis elegans] ref|NP_495061.2| C17C3.9 [Caenorhabditis elegans] 2.0E-79
blast AAK31425 Hypothetical protein C17C3.9 [Caenorhabditis elegans] ref|NP_495061.2| C17C3.9 [Caenorhabditis elegans] 4.0E-44
blast AAK31423 Helix loop helix protein 27 [Caenorhabditis elegans] ref|NP_495065.1| Helix Loop Helix family member (hlh-27) [Caenorhabditis elegans] 1.0E-12
Protein Domains
Database ID Description E-Value
Pfam IPR001092 EMBL-EBI Basic helix-loop-helix dimerization domain bHLH 2.8E-8
Sequence
Target Sequence 
>C. ELEGANS:183930_AT
ggtcgagcgaaaggcagttgcagagaaccaatcacaaatcttgactatggtgactatttc
tgaaacggaaatggagaaggcggaactggagaatattgttggttgctttgaccgttatga
gaaggaaatatctacaattccggacgaatatcgaacgcatccctgtgtaatcaaattcca
aaattgcattagagcattgtgcaacgttgtcgcaaaaaagttgaacaacacaactcgcga
tgttgaaactcagaccaattttcagtcaccaaggatt

BLASTn GenBank NR
Probe Info
Probe Sequence(5'-3') Probe X Probe Y Probe Interrogation
Position 		Strandedness
GGTCGAGCGAAAGGCAGTTGCAGAG 709 499 36 Antisense
GAGAACCAATCACAAATCTTGACTA 570 391 58 Antisense
TCTTGACTATGGTGACTATTTCTGA 195 619 74 Antisense
ATTGTTGGTTGCTTTGACCGTTATG 209 5 130 Antisense
GAAATATCTACAATTCCGGACGAAT 157 361 160 Antisense
ACGAATATCGAACGCATCCCTGTGT 99 93 179 Antisense
CGCATCCCTGTGTAATCAAATTCCA 292 255 191 Antisense
GAGCATTGTGCAACGTTGTCGCAAA 439 389 227 Antisense
GTTGAACAACACAACTCGCGATGTT 292 437 255 Antisense
CTCGCGATGTTGAAACTCAGACCAA 89 233 269 Antisense
GACCAATTTTCAGTCACCAAGGATT 497 383 288 Antisense
Sequence Source Affymetrix Proprietary Database