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[183929_at]

Description Y60A3A.3 /REP_DB=WormBase Gene ID /WP=CE24527 /TR=Q9U200 /GB=CAB60391.1 /SUBMIT=HINXTON /CHR=5 /FEA=Sanger Annotation
Cluster 6grp_total > 09      4grp_total > 20      6grp_cgc > 85      6grp_cgc_sub > 04      

Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 152
1 2 3 4 range
A 64.2
(-1)
A 		50.7
(-1.5)
A 		14.2
(-3)
A 		164.2
(3)
A 		150
B 59.2
(3)
A 		12.9
(-3)
A 		13.5
(-2.9)
A 		50.5
(1.9)
A 		46
C 54.7
(0.7)
A 		54.8
(0.7)
A 		11.8
(-3)
A 		80.7
(3)
A 		69
avr 59.4
(0.2) 		39.5
(-1.2) 		13.2
(-3) 		98.5
(3) 		85

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 80
1 2 3 4 5 6 range
A 33.1
(-0.7)
A 		2.8
(-3)
A 		83.1
(3)
A 		8
(-2.6)
A 		66.8
(1.8)
A 		23.9
(-1.4)
A 		80
B 44.1
(1.6)
A 		17.7
(-1.7)
A 		10.1
(-2.6)
A 		55.2
(3)
A 		30
(-0.2)
A 		7.3
(-3)
A 		48
C 28.4
(-0.6)
A 		46.4
(2.1)
A 		11.6
(-3)
A 		52.8
(3)
A 		12.2
(-2.9)
A 		49
(2.4)
A 		41
avr 35.2
(1.7) 		22.3
(-3) 		34.9
(1.6) 		38.7
(3) 		36.3
(2.1) 		26.7
(-1.4) 		16
No Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 21
1 2 3 4 range
A 23.4
(2.8)
A 		11
(-0.8)
A 		3.7
(-3)
A 		24
(3)
A 		20
B 18.9
(3)
A 		3.2
(-3)
A 		3.1
(-3)
A 		10.8
(-0.1)
A 		16
C 18.1
(3)
A 		15.8
(2)
A 		4.1
(-3)
A 		13.6
(1.1)
A 		14
avr 20.1
(3) 		10
(-0.7) 		3.6
(-3) 		16.1
(1.5) 		17

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 19
1 2 3 4 5 6 range
A 6.1
(-1.4)
A 		1
(-3)
A 		18.1
(2.3)
A 		2
(-2.7)
A 		20.2
(3)
A 		5.8
(-1.5)
A 		19
B 15.3
(3)
A 		5.9
(-1.4)
A 		2.5
(-3)
A 		14.6
(2.7)
A 		12.2
(1.5)
A 		2.7
(-2.9)
A 		13
C 10.5
(0.4)
A 		14.2
(2)
A 		2.9
(-3)
A 		10.6
(0.4)
A 		4
(-2.5)
A 		16.4
(3)
A 		14
avr 10.6
(1.2) 		7
(-3) 		7.8
(-2.1) 		9.1
(-0.5) 		12.1
(3) 		8.3
(-1.5) 		5
NetAffx Links Cluster Members
Consensus/Exemplar
GeneChip Array Information
Probe Set ID 183929_at
GeneChip Array C. elegans Genome Array
Organism Common Name Nematode
Probe Design Information
Transcript ID(Array Design) affy.Ce.12558
Sequence Type Exemplar sequence
Representative Public ID Y60A3A.3 NCBI
Target Description Y60A3A.3 /REP_DB=WormBase Gene ID /WP=CE24527 /TR=Q9U200 /GB=CAB60391.1 /SUBMIT=HINXTON /CHR=5 /FEA=Sanger Annotation
Annotation Method Description
Annotation Description This probe set was annotated using the Matching Probes based pipeline to a RefSeq identifier using 1 transcript(s).
Annotation Grade This is a grade A annotation.
Annotation Transcript Cluster (# of Matching Probes) NM_075466(11)
Transcript Assignments
Representative
Transcript		 Description Matching Probes Related Probesets by Grade
NM_075466 NCBI Caenorhabditis elegans Serpentine Receptor, class H family member (srh-183) (srh-183) mRNA, complete cds. 11/11 None
SNAP00000032814 ENSEMBL cdna:SNAP chromosome:CEL140:V:19973607:19976158:-1 11/11 None
GENEFINDER00000032834 ENSEMBL cdna:GeneFinder chromosome:CEL140:V:19973607:19976179:-1 11/11 None
Y60A3A.3 ENSEMBL cdna:known chromosome:CEL140:V:19973607:19976317:-1 gene:Y60A3A.3 11/11 None
Annotation Notes
There are no noteworthy cross hybridizing mRNAs found for this probe set.
Genomic Alignment of Consensus/Exemplar Sequence
Assembly Wormbase March 2004
Alignment(s)
Position Identity Coverage Cytoband
chrV:19973606-19976317(-) 100.0 100.0
Public Domain and Genome References
Gene Title
Gene Symbol srh-183
Ensembl Y60A3A.3
Entrez Gene 190431 Entrez gene
SwissProt Q9U200 EMBL-EBI
WormBase CE24527 Wormbase
Functional Annotations
Gene Ontology
GO Cellular Component (view graph)
ID Description Evidence Links
16020 membrane inferred from electronic annotation QuickGO AmiGO
GO Molecular Function (view graph)
ID Description Evidence Links
4930 G-protein coupled receptor activity inferred from electronic annotation QuickGO AmiGO
Protein Similarities
Method ID Description E-Value
blast CAB60391 Hypothetical protein Y60A3A.3 [Caenorhabditis elegans] ref|NP_507867.1| Serpentine Receptor, class H family member (srh-183) [Caenorhabditis elegans] 0.0
blast CAB60391 Hypothetical protein Y60A3A.3 [Caenorhabditis elegans] ref|NP_507867.1| Serpentine Receptor, class H family member (srh-183) [Caenorhabditis elegans] 1.0E-155
blast CAB60391 Hypothetical protein Y60A3A.3 [Caenorhabditis elegans] ref|NP_507867.1| Serpentine Receptor, class H family member (srh-183) [Caenorhabditis elegans] 1.0E-151
blast CAA98445 Hypothetical protein D1054.12 [Caenorhabditis elegans] ref|NP_505760.2| Serpentine Receptor, class H family member (srh-184) [Caenorhabditis elegans] 1.0E-110
blast CAB04998 Hypothetical protein ZK228.7 [Caenorhabditis elegans] ref|NP_507618.1| Serpentine Receptor, class H family member (srh-179) [Caenorhabditis elegans] 8.0E-96
blast CAA98445 Hypothetical protein D1054.12 [Caenorhabditis elegans] ref|NP_505760.2| Serpentine Receptor, class H family member (srh-184) [Caenorhabditis elegans] 3.0E-94
blast CAA98445 Hypothetical protein D1054.12 [Caenorhabditis elegans] ref|NP_505760.2| Serpentine Receptor, class H family member (srh-184) [Caenorhabditis elegans] 4.0E-92
Protein Domains
Database ID Description E-Value
Pfam IPR003003 EMBL-EBI 7TM chemoreceptor, subfamily 2 1.0E-126
Pfam IPR003003 EMBL-EBI 7TM chemoreceptor, subfamily 2 1.0E-126
Pfam IPR003003 EMBL-EBI 7TM chemoreceptor, subfamily 2 1.0E-126
Trans Membrane
ID Number Of Domains Domain Boundaries
NP_507867.1 7 19-41,54-76,96-118,139-158,200-222,243-265,275-297
Y60A3A.3 7 19-41,54-76,96-118,139-158,200-222,243-265,275-297
SNAP00000032814 6 2-23,43-65,86-105,147-169,190-212,222-244
GENEFINDER00000032834 6 9-30,50-72,93-112,154-176,197-219,229-251
Sequence
Target Sequence 
>C. ELEGANS:183929_AT
atctcacttacatttcctataccgacatatctgaacatcccagatcaggaactagggctt
gagctgacaataacggaagtcccatgcctcccacttgatgtcttcaaccgtcctggatac
ataatcttatcaattgataactctattccctgcttatccatgattttcatgctatcactg
ttcattcctcaaataatcgtatttgtaatttcaatatcctggcacttattccgcacaact
tcccaatcagcagctaccagccggctgcaaaagcaatttttcttcgcaatgtgcctgcaa
gtgttcattccaatatttgtgctagcatttccagtgatctatattattatgtccattgtg
ttgggttattttaatcaagctgcatccaaccttgcaat

BLASTn GenBank NR
Probe Info
Probe Sequence(5'-3') Probe X Probe Y Probe Interrogation
Position 		Strandedness
ATCTCACTTACATTTCCTATACCGA 140 33 448 Antisense
ACAATAACGGAAGTCCCATGCCTCC 176 113 514 Antisense
ATGTCTTCAACCGTCCTGGATACAT 443 47 545 Antisense
AATTGATAACTCTATTCCCTGCTTA 518 177 579 Antisense
ATTCCCTGCTTATCCATGATTTTCA 402 9 592 Antisense
TCATGCTATCACTGTTCATTCCTCA 341 621 614 Antisense
TCAATATCCTGGCACTTATTCCGCA 610 633 658 Antisense
ATTTTTCTTCGCAATGTGCCTGCAA 542 15 723 Antisense
GTGCCTGCAAGTGTTCATTCCAATA 691 477 738 Antisense
TTTGTGCTAGCATTTCCAGTGATCT 173 667 763 Antisense
ATCAAGCTGCATCCAACCTTGCAAT 178 27 821 Antisense
Sequence Source Affymetrix Proprietary Database