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[183928_at]

Description R07C3.7 /REP_DB=WormBase Gene ID /WP=CE12534 /TR=O16769 /GB=AAB66237.1 /SUBMIT=ST.LOUIS /CHR=2 /FEA=Sanger Annotation
Cluster 6grp_total > 62      4grp_total > 15      6grp_total_sub > Hat      

Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 75
1 2 3 4 range
A 42.5
(0.1)
A 		4.4
(-3)
A 		34.9
(-0.6)
A 		79.3
(3)
A 		75
B 56.5
(3)
A 		54
(2.7)
A 		12.5
(-3)
A 		47.5
(1.8)
A 		44
C 35.8
(1.3)
A 		6.3
(-3)
A 		47.6
(3)
A 		6.8
(-2.9)
A 		41
avr 44.9
(3) 		21.6
(-3) 		31.7
(-0.4) 		44.5
(2.9) 		23

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 26
1 2 3 4 5 6 range
A 4.7
(-3)
A 		10.4
(-1.5)
A 		27.7
(3)
A 		5.1
(-2.9)
A 		21.5
(1.4)
A 		7.2
(-2.3)
A 		23
B 14.2
(3)
A 		2
(-3)
A 		4.5
(-1.8)
A 		12.4
(2.1)
A 		5.3
(-1.4)
A 		7.8
(-0.1)
A 		12
C 4.9
(-2.8)
A 		9.3
(-0.9)
A 		9.9
(-0.7)
A 		18.9
(3)
A 		6.6
(-2.1)
A 		4.3
(-3)
A 		15
avr 7.9
(-1.8) 		7.2
(-2.4) 		14
(3) 		12.1
(1.5) 		11.1
(0.7) 		6.4
(-3) 		8
No Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 17
1 2 3 4 range
A 15.5
(3)
A 		1
(-3)
A 		9.1
(0.4)
A 		11.6
(1.4)
A 		15
B 18
(3)
A 		13.3
(1.1)
A 		2.9
(-3)
A 		10.1
(-0.1)
A 		15
C 11.9
(1.2)
A 		1.8
(-2.7)
A 		16.6
(3)
A 		1.1
(-3)
A 		16
avr 15.1
(3) 		5.4
(-3) 		9.5
(-0.5) 		7.6
(-1.6) 		10

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 6
1 2 3 4 5 6 range
A 0.9
(-3)
A 		3.7
(0)
A 		6
(2.5)
A 		1.3
(-2.6)
A 		6.5
(3)
A 		1.8
(-2)
A 		6
B 4.9
(3)
A 		0.7
(-3)
A 		1.1
(-2.4)
A 		3.3
(0.7)
A 		2.2
(-0.9)
A 		2.9
(0.1)
A 		4
C 1.8
(-2)
A 		2.8
(0.5)
A 		2.5
(-0.3)
A 		3.8
(3)
A 		2.1
(-1.3)
A 		1.4
(-3)
A 		2
avr 2.5
(-1.1) 		2.4
(-1.5) 		3.2
(1.5) 		2.8
(-0) 		3.6
(3) 		2
(-3) 		2
NetAffx Links Cluster Members
Consensus/Exemplar
GeneChip Array Information
Probe Set ID 183928_at
GeneChip Array C. elegans Genome Array
Organism Common Name Nematode
Probe Design Information
Transcript ID(Array Design) affy.Ce.5447
Sequence Type Exemplar sequence
Representative Public ID R07C3.7 NCBI
Target Description R07C3.7 /REP_DB=WormBase Gene ID /WP=CE12534 /TR=O16769 /GB=AAB66237.1 /SUBMIT=ST.LOUIS /CHR=2 /FEA=Sanger Annotation
Annotation Method Description
Annotation Description This probe set was annotated using the Matching Probes based pipeline to a RefSeq identifier using 1 transcript(s).
Annotation Grade This is a grade A annotation.
Annotation Transcript Cluster (# of Matching Probes) NM_061449(11)
Transcript Assignments
Representative
Transcript		 Description Matching Probes Related Probesets by Grade
NM_061449 NCBI Caenorhabditis elegans R07C3.7 (R07C3.7) mRNA, complete cds. 11/11 A 
SNAP00000022237 ENSEMBL cdna:SNAP chromosome:CEL140:II:917630:919404:1 10/11 None
GENEFINDER00000022254 ENSEMBL cdna:GeneFinder chromosome:CEL140:II:917630:919423:1 11/11 None
R07C3.7 ENSEMBL cdna:known chromosome:CEL140:II:916086:919423:1 gene:R07C3.7 11/11 A 
Annotation Notes
There are no noteworthy cross hybridizing mRNAs found for this probe set.
Genomic Alignment of Consensus/Exemplar Sequence
Assembly Wormbase March 2004
Alignment(s)
Position Identity Coverage Cytoband
chrII:916084-919422(+) 100.0 100.0
Public Domain and Genome References
Gene Title
Ensembl R07C3.7
Entrez Gene 173474 Entrez gene
SwissProt O16769 EMBL-EBI
WormBase CE12534 Wormbase
Functional Annotations
Protein Similarities
Method ID Description E-Value
blast AAB66237 Hypothetical protein R07C3.7 [Caenorhabditis elegans] ref|NP_493850.1| R07C3.7 [Caenorhabditis elegans] 0.0
blast AAC68940 Hypothetical protein C44C8.3 [Caenorhabditis elegans] gb|AAC68941.1| Hypothetical protein C44C8.2 [Caenorhabditis elegans] ref|NP_500008.1| C44C8.3 [Caenorhabditis elegans] ref|NP_500009.1| C44C8.2 [Caenorhabditis elegans] 1.0E-61
blast AAC68942 Hypothetical protein C44C8.4 [Caenorhabditis elegans] ref|NP_500007.1| C44C8.4 [Caenorhabditis elegans] 1.0E-60
blast AAB66198 Hypothetical protein K09F6.8 [Caenorhabditis elegans] ref|NP_494228.1| K09F6.8 [Caenorhabditis elegans] 2.0E-38
blast AAB66198 Hypothetical protein K09F6.8 [Caenorhabditis elegans] ref|NP_494228.1| K09F6.8 [Caenorhabditis elegans] 1.0E-36
Sequence
Target Sequence 
>C. ELEGANS:183928_AT
attctagacggcttcacagcgctgtgaagtatctggtggaaaacttgatcggcggtagag
ctcaagtaaacattcaaaaactgtctatcaagccacaaggagtacttcggttaccgaaaa
ctttaaagttcaaaatctcggaactagatataggatgttgggaaaccgagaagttgctca
acacaatcaagccgctgctcacattctccagcttcccactgaaatccctgtccatttacg
gagactctcattttgcggaccccattattcaaatttcccggcaactttgcatcagcacac
aggtcgcaattgctaggttagctaatctgcgatatggccatcgaaatgttttcgtgaaga
aaatgagcaaatatatgattaatgattttttgaagttgaccaaaagtttcgtggaaaatg
gacgggatcttggatcggatgctcgagattttgcggagagttctggcaaattgagaagat
cggaaccatccctgatcgttgttcgaatgaagaacactgcggaactccttataactctac
a

BLASTn GenBank NR
Probe Info
Probe Sequence(5'-3') Probe X Probe Y Probe Interrogation
Position 		Strandedness
ATTCTAGACGGCTTCACAGCGCTGT 287 9 1862 Antisense
GAAAACTTGATCGGCGGTAGAGCTC 168 355 1900 Antisense
TGCTCAACACAATCAAGCCGCTGCT 106 581 2036 Antisense
AATCCCTGTCCATTTACGGAGACTC 78 167 2084 Antisense
CTCATTTTGCGGACCCCATTATTCA 558 229 2108 Antisense
TTTCCCGGCAACTTTGCATCAGCAC 710 669 2135 Antisense
GCATCAGCACACAGGTCGCAATTGC 431 309 2150 Antisense
GGTTAGCTAATCTGCGATATGGCCA 319 507 2177 Antisense
GGGATCTTGGATCGGATGCTCGAGA 586 495 2285 Antisense
GAACCATCCCTGATCGTTGTTCGAA 53 347 2344 Antisense
CTGCGGAACTCCTTATAACTCTACA 131 237 2378 Antisense
Sequence Source Affymetrix Proprietary Database