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[183927_at]

Description C36C5.1 /REP_DB=WormBase Gene ID /WP=CE23572 /TR=O16413 /GB=AAB65925.2 /SUBMIT=ST.LOUIS /CHR=5 /FEA=Sanger Annotation
Cluster 6grp_total > 11      4grp_total > 26      6grp_cgc > 53      6grp_cgc_sub > 02      6grp_total_sub > Hat      

Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 45
1 2 3 4 range
A 4.9
(-3)
A 		40.3
(3)
A 		7.1
(-2.6)
A 		20.6
(-0.3)
A 		35
B 4.5
(-3)
A 		15.1
(-0.3)
A 		18.4
(0.5)
A 		28.1
(3)
A 		24
C 7.1
(-2.6)
A 		5.6
(-2.8)
A 		3.8
(-3)
A 		48.8
(3)
A 		45
avr 5.5
(-3) 		20.3
(0.3) 		9.8
(-2) 		32.5
(3) 		27

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 24
1 2 3 4 5 6 range
A 3.6
(-1.9)
A 		6.5
(0.7)
A 		9
(3)
A 		4.6
(-1)
A 		4.4
(-1.2)
A 		2.4
(-3)
A 		7
B 4.7
(0.3)
A 		4.4
(-1.4)
A 		5.2
(3)
A 		4.1
(-3)
A 		4.2
(-2.5)
A 		4.2
(-2.5)
A 		1
C 3.1
(-2.7)
A 		25.4
(3)
A 		3.2
(-2.6)
A 		7.6
(-1.5)
A 		1.8
(-3)
A 		1.8
(-3)
A 		24
avr 3.8
(-2.4) 		12.1
(3) 		5.8
(-1.1) 		5.4
(-1.3) 		3.5
(-2.5) 		2.8
(-3) 		9
No Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 8
1 2 3 4 range
A 1.8
(-3)
A 		8.8
(3)
A 		1.9
(-2.9)
A 		3
(-2)
A 		7
B 1.4
(-3)
A 		3.7
(0)
A 		4.3
(0.8)
A 		6
(3)
A 		5
C 2.4
(-2)
A 		1.6
(-2.7)
A 		1.3
(-3)
A 		8.2
(3)
A 		7
avr 1.9
(-3) 		4.7
(1.4) 		2.5
(-2.1) 		5.7
(3) 		4

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 7
1 2 3 4 5 6 range
A 0.7
(-2.6)
A 		2.3
(3)
A 		2
(1.9)
A 		1.2
(-0.9)
A 		1.3
(-0.5)
A 		0.6
(-3)
A 		2
B 1.6
(2)
A 		1.5
(1)
A 		1.3
(-1)
A 		1.1
(-3)
A 		1.7
(3)
A 		1.6
(2)
A 		1
C 1.2
(-2.5)
A 		7.8
(3)
A 		0.8
(-2.8)
A 		1.5
(-2.3)
A 		0.6
(-3)
A 		0.6
(-3)
A 		7
avr 1.2
(-2.4) 		3.9
(3) 		1.4
(-2) 		1.3
(-2.2) 		1.2
(-2.4) 		0.9
(-3) 		3
NetAffx Links Cluster Members
Consensus/Exemplar
GeneChip Array Information
Probe Set ID 183927_at
GeneChip Array C. elegans Genome Array
Organism Common Name Nematode
Probe Design Information
Transcript ID(Array Design) affy.Ce.15587
Sequence Type Exemplar sequence
Representative Public ID C36C5.1 NCBI
Target Description C36C5.1 /REP_DB=WormBase Gene ID /WP=CE23572 /TR=O16413 /GB=AAB65925.2 /SUBMIT=ST.LOUIS /CHR=5 /FEA=Sanger Annotation
Annotation Method Description
Annotation Description Only library file information is available for this probe set. See probe design information above.
Transcript Assignments
Representative
Transcript		 Description Matching Probes Related Probesets by Grade
GENEFINDER00000021849 ENSEMBL cdna:GeneFinder chromosome:CEL140:V:3179995:3182166:1 10/11 None
C36C5.1 ENSEMBL cdna:known chromosome:CEL140:V:3179354:3180889:1 gene:C36C5.1 11/11 None
Annotation Notes
There are no noteworthy cross hybridizing mRNAs found for this probe set.
Genomic Alignment of Consensus/Exemplar Sequence
Assembly Wormbase March 2004
Alignment(s)
Position Identity Coverage Cytoband
chrV:3179353-3180889(+) 100.0 100.0
Public Domain and Genome References
Ensembl C36C5.1
Functional Annotations
Protein Similarities
Method ID Description E-Value
blast NP_503875 Serpentine Receptor, class AB (class A-like) family member (srab-8) [Caenorhabditis elegans] gb|AAB65926.1| Serpentine receptor, class ab (class a-like) protein 8 [Caenorhabditis elegans] 1.0E-133
blast AAB37596 Serpentine receptor, class ab (class a-like) protein 22 [Caenorhabditis elegans] ref|NP_503960.2| Serpentine Receptor, class AB (class A-like) family member (srab-22) [Caenorhabditis elegans] 1.0E-132
blast AAB37595 Serpentine receptor, class ab (class a-like) protein 21 [Caenorhabditis elegans] ref|NP_503959.2| Serpentine Receptor, class AB (class A-like) family member (srab-21) [Caenorhabditis elegans] 1.0E-131
blast NP_503875 Serpentine Receptor, class AB (class A-like) family member (srab-8) [Caenorhabditis elegans] gb|AAB65926.1| Serpentine receptor, class ab (class a-like) protein 8 [Caenorhabditis elegans] 4.0E-75
blast AAB37596 Serpentine receptor, class ab (class a-like) protein 22 [Caenorhabditis elegans] ref|NP_503960.2| Serpentine Receptor, class AB (class A-like) family member (srab-22) [Caenorhabditis elegans] 1.0E-73
blast AAB37597 Serpentine receptor, class ab (class a-like) protein 20 [Caenorhabditis elegans] ref|NP_503961.2| Serpentine Receptor, class AB (class A-like) family member (srab-20) [Caenorhabditis elegans] 2.0E-71
Protein Domains
Trans Membrane
ID Number Of Domains Domain Boundaries
C36C5.1 7 24-46,53-75,110-129,136-158,178-200,241-263,273-295
GENEFINDER00000021849 5 21-43,58-80,117-139,149-171,220-239
Sequence
Target Sequence 
>C. ELEGANS:183927_AT
atacattgccacagtcagatcaacaagttatgagcactttggatgcacattaggaattct
gatggcagcattgcattgtatggaaaatttctgggaaaaagtatataaattatattcatt
tgctgacccttttcaagattattgcattggttttagcattggagtcattggcagcacgga
aattattaatatggtgagcgttgtaacccaaattattggaagaatattgtttgagtatat
gtttcggaagaatgaaaaactccgcgcaaaacaattaacgtctacactttcgaatcgata
ctcactggagcagaacttgaaatctatgagaacactgaaagtgtttgccaatttacaatc
gacatttctcatttttcaattgtcaacatttctcttcattctctatcttggacaggcgat
tgaaaaaacaacatatatttctttgattgaattaaatgctggctacccagtttacgccat
tgtttccatcgttataattttccgaagaaatcggttgaacaaggtgaagatcatgaagtc
cctcgcaaatcacgtcaatgctg

BLASTn GenBank NR
Probe Info
Probe Sequence(5'-3') Probe X Probe Y Probe Interrogation
Position 		Strandedness
ATACATTGCCACAGTCAGATCAACA 141 25 393 Antisense
ATTCATTTGCTGACCCTTTTCAAGA 420 11 506 Antisense
GCATTGGAGTCATTGGCAGCACGGA 438 307 548 Antisense
TAACGTCTACACTTTCGAATCGATA 212 639 668 Antisense
TTACAATCGACATTTCTCATTTTTC 654 683 745 Antisense
AATTGTCAACATTTCTCTTCATTCT 436 179 770 Antisense
TCTTCATTCTCTATCTTGGACAGGC 386 617 785 Antisense
AAATGCTGGCTACCCAGTTTACGCC 269 117 846 Antisense
GTTTACGCCATTGTTTCCATCGTTA 380 447 862 Antisense
GTGAAGATCATGAAGTCCCTCGCAA 405 481 916 Antisense
TCCCTCGCAAATCACGTCAATGCTG 16 599 931 Antisense
Sequence Source Affymetrix Proprietary Database