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[183926_at]

Description M02F4.2 /REP_DB=WormBase Gene ID /WP=CE04763 /TR=Q21470 /GB=AAA83202.1 /SUBMIT=ST.LOUIS /CHR=X /FEA=Sanger Annotation
Cluster 6grp_total > 75      4grp_total > 01      

Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 32
1 2 3 4 range
A 1
(-3)
A 		2.7
(-2.6)
A 		16.2
(0.7)
A 		25.7
(3)
A 		25
B 19.9
(3)
A 		11.2
(0.2)
A 		1
(-3)
A 		4.3
(-2)
A 		19
C 1.3
(-3)
A 		1.4
(-3)
A 		3.7
(-2.5)
A 		33
(3)
A 		32
avr 7.4
(-2.1) 		5.1
(-3) 		7
(-2.3) 		21
(3) 		16

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 31
1 2 3 4 5 6 range
A 8.4
(-1.6)
A 		1.2
(-3)
A 		1.1
(-3)
A 		23.8
(1.4)
A 		5
(-2.2)
A 		32
(3)
A 		31
B 0.9
(-3)
A 		1.7
(-2.7)
A 		18.6
(3)
A 		3.6
(-2.1)
A 		5.3
(-1.5)
A 		9.6
(-0.1)
A 		18
C 2.9
(-2.8)
A 		11.2
(-1.1)
A 		1.8
(-3)
A 		32
(3)
A 		4.3
(-2.5)
A 		9.7
(-1.4)
A 		30
avr 4.1
(-3) 		4.7
(-2.8) 		7.2
(-1.8) 		19.8
(3) 		4.9
(-2.7) 		17.1
(2) 		16
No Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 6
1 2 3 4 range
A 0.4
(-3)
A 		0.6
(-2.7)
A 		4.2
(3)
A 		3.8
(2.4)
A 		4
B 6.3
(3)
A 		2.8
(-0.4)
A 		0.2
(-3)
A 		0.9
(-2.3)
A 		6
C 0.4
(-3)
A 		0.4
(-3)
A 		1.3
(-2)
A 		5.6
(3)
A 		5
avr 2.4
(0.1) 		1.3
(-3) 		1.9
(-1.3) 		3.4
(3) 		2

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 8
1 2 3 4 5 6 range
A 1.6
(-1.9)
A 		0.4
(-2.8)
A 		0.2
(-3)
A 		6
(1.6)
A 		1.5
(-2)
A 		7.8
(3)
A 		8
B 0.3
(-3)
A 		0.6
(-2.6)
A 		4.5
(3)
A 		0.9
(-2.1)
A 		2.2
(-0.3)
A 		3.6
(1.7)
A 		4
C 1.1
(-2.4)
A 		3.4
(-0.1)
A 		0.5
(-3)
A 		6.4
(3)
A 		1.4
(-2.1)
A 		3.3
(-0.2)
A 		6
avr 1
(-3) 		1.5
(-2.2) 		1.7
(-1.9) 		4.4
(2.2) 		1.7
(-1.9) 		4.9
(3) 		4
NetAffx Links Cluster Members
Consensus/Exemplar
GeneChip Array Information
Probe Set ID 183926_at
GeneChip Array C. elegans Genome Array
Organism Common Name Nematode
Probe Design Information
Transcript ID(Array Design) affy.Ce.18083
Sequence Type Exemplar sequence
Representative Public ID M02F4.2 NCBI
Target Description M02F4.2 /REP_DB=WormBase Gene ID /WP=CE04763 /TR=Q21470 /GB=AAA83202.1 /SUBMIT=ST.LOUIS /CHR=X /FEA=Sanger Annotation
Annotation Method Description
Annotation Description This probe set was annotated using the Matching Probes based pipeline to a RefSeq identifier using 1 transcript(s).
Annotation Grade This is a grade A annotation.
Annotation Transcript Cluster (# of Matching Probes) NM_076118(9)
Transcript Assignments
Representative
Transcript		 Description Matching Probes Related Probesets by Grade
NM_076118 NCBI Caenorhabditis elegans M02F4.2 (M02F4.2) mRNA, complete cds. 9/11 None
GENEFINDER00000027806 ENSEMBL cdna:GeneFinder chromosome:CEL140:X:3033316:3035515:-1 11/11 None
SNAP00000027800 ENSEMBL cdna:SNAP chromosome:CEL140:X:3033712:3035178:-1 10/11 None
M02F4.2 ENSEMBL cdna:known chromosome:CEL140:X:3033316:3034294:-1 gene:M02F4.2 9/11 None
Annotation Notes
There are no noteworthy cross hybridizing mRNAs found for this probe set.
Genomic Alignment of Consensus/Exemplar Sequence
Assembly Wormbase March 2004
Alignment(s)
Position Identity Coverage Cytoband
chrX:3033315-3035515(-) 100.0 100.0
Public Domain and Genome References
Gene Title
Ensembl M02F4.2
Entrez Gene 187401 Entrez gene
SwissProt Q21470 EMBL-EBI
WormBase CE35744 Wormbase
Functional Annotations
Protein Similarities
Method ID Description E-Value
blast CAB05625 Hypothetical protein T15D6.12 [Caenorhabditis elegans] ref|NP_493143.1| T15D6.12 [Caenorhabditis elegans] 0.0
blast CAB04027 Hypothetical protein E03H4.5 [Caenorhabditis elegans] ref|NP_493148.1| E03H4.5 [Caenorhabditis elegans] 0.0
blast AAC17753 Hypothetical protein C18G1.6 [Caenorhabditis elegans] ref|NP_504276.1| C18G1.6 [Caenorhabditis elegans] 1.0E-180
blast CAB04027 Hypothetical protein E03H4.5 [Caenorhabditis elegans] ref|NP_493148.1| E03H4.5 [Caenorhabditis elegans] 1.0E-168
blast CAB05625 Hypothetical protein T15D6.12 [Caenorhabditis elegans] ref|NP_493143.1| T15D6.12 [Caenorhabditis elegans] 1.0E-167
blast AAC17753 Hypothetical protein C18G1.6 [Caenorhabditis elegans] ref|NP_504276.1| C18G1.6 [Caenorhabditis elegans] 1.0E-144
blast AAA83202 Hypothetical protein M02F4.2 [Caenorhabditis elegans] ref|NP_508519.2| M02F4.2 [Caenorhabditis elegans] 7.0E-76
blast CAB04027 Hypothetical protein E03H4.5 [Caenorhabditis elegans] ref|NP_493148.1| E03H4.5 [Caenorhabditis elegans] 1.0E-54
Protein Domains
Database ID Description E-Value
Pfam IPR008166 EMBL-EBI Protein of unknown function DUF23 2.1E-16
Pfam IPR008166 EMBL-EBI Protein of unknown function DUF23 1.0E-126
Pfam IPR008166 EMBL-EBI Protein of unknown function DUF23 1.5E-113
Trans Membrane
ID Number Of Domains Domain Boundaries
GENEFINDER00000027806 1 7-24
Sequence
Target Sequence 
>C. ELEGANS:183926_AT
acgactattggatcagtggcggattttgatgaagtgatggtacctcgcaatggtacaatg
ttggaatatgcatcaaaggaaatgactggaacaaatgttggagcattgttatttaagaat
tcttatgtttcactggaacccagcatttatgaaaatgtattttctggagtctcgaagcca
gtgttcctagatggtacagcgtggccgaaggtaaatacgttttcgatgcctctgcaattt
attgctcaagttcattgggttagaagtttcacggattctacaaaacttacaaaagattct
gatggtacactgttgcatcatcgctttgatgcaaaatggaaaagaggagaggaagtggag
aagctgttcacatatttcccaaacaacacctcagcgcatgttgcgagtatgcaaaagact
gctataacaatattcaatggttcgcttcccgtattctcatttgatttca

BLASTn GenBank NR
Probe Info
Probe Sequence(5'-3') Probe X Probe Y Probe Interrogation
Position 		Strandedness
ACGACTATTGGATCAGTGGCGGATT 410 91 790 Antisense
GATGAAGTGATGGTACCTCGCAATG 135 413 817 Antisense
GAATTCTTATGTTTCACTGGAACCC 182 323 906 Antisense
TGTATTTTCTGGAGTCTCGAAGCCA 597 559 945 Antisense
GTTCCTAGATGGTACAGCGTGGCCG 151 439 972 Antisense
GTAAATACGTTTTCGATGCCTCTGC 295 461 1000 Antisense
GATGCCTCTGCAATTTATTGCTCAA 681 413 1014 Antisense
GGAGAAGCTGTTCACATATTTCCCA 667 519 1146 Antisense
TCACATATTTCCCAAACAACACCTC 656 627 1157 Antisense
ACAACACCTCAGCGCATGTTGCGAG 473 111 1172 Antisense
CTTCCCGTATTCTCATTTGATTTCA 392 219 1234 Antisense
Sequence Source Affymetrix Proprietary Database