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[183925_at]

Description B0511.8 /REP_DB=WormBase Gene ID /WP=CE17347 /TR=O61818 /GB=AAC17649.1 /SUBMIT=ST.LOUIS /CHR=1 /FEA=Sanger Annotation
Cluster 6grp_high1_10_10 > 97      6grp_total > 97      4grp_total > 09      6grp_high1_sub > In      6grp_total_sub > Increase      6grp_rule_based > S6      4grp_rule_based > L4      

Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 194
1 2 3 4 range
A 105.5
(-3)
A 		127.4
(-2.1)
A 		177.4
(0)
A 		249.2
(3)
P 		144
B 134.2
(-2.4)
A 		140.6
(-2.1)
A 		120.1
(-3)
A 		260.5
(3)
P 		140
C 102.4
(-2)
A 		101
(-2.1)
A 		71.6
(-3)
A 		265.7
(3)
P 		194
avr 114
(-3) 		123
(-2.6) 		123
(-2.6) 		258.5
(3) 		145

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 685
1 2 3 4 5 6 range
A 193.8
(-2.1)
A 		149.4
(-2.8)
P 		136.3
(-3)
A 		249.8
(-1.2)
P 		458.9
(2.1)
P 		516.2
(3)
P 		380
B 100.1
(-3)
P 		112
(-2.9)
A 		171.8
(-2.2)
P 		228.9
(-1.5)
P 		469.3
(1.3)
P 		620.3
(3)
P 		520
C 69.1
(-3)
A 		124.8
(-2.5)
A 		111.5
(-2.6)
A 		257.5
(-1.3)
P 		414
(0)
P 		753.6
(3)
P 		685
avr 121
(-3) 		128.7
(-2.9) 		139.9
(-2.8) 		245.4
(-1.5) 		447.4
(0.8) 		630
(3) 		509
No Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 31
1 2 3 4 range
A 38.4
(0.4)
A 		27.6
(-3)
A 		46.4
(3)
A 		36.5
(-0.2)
P 		19
B 42.8
(0.2)
A 		34.7
(-1.5)
A 		27.8
(-3)
A 		55.5
(3)
P 		28
C 33.9
(-0.3)
A 		29
(-1.8)
A 		25
(-3)
A 		44.8
(3)
P 		20
avr 38.4
(0.2) 		30.4
(-3) 		33.1
(-1.9) 		45.6
(3) 		15

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 227
1 2 3 4 5 6 range
A 35.7
(-2.7)
A 		53.1
(-1.7)
P 		29.7
(-3)
A 		63.3
(-1.1)
P 		138.5
(3)
P 		125.7
(2.3)
P 		109
B 34.8
(-3)
P 		37.3
(-2.9)
A 		41.7
(-2.8)
P 		60.6
(-2.2)
P 		190.7
(1.8)
P 		231.3
(3)
P 		197
C 25.6
(-3)
A 		38.1
(-2.7)
A 		28.4
(-2.9)
A 		51.8
(-2.3)
P 		133.9
(-0.1)
P 		252.3
(3)
P 		227
avr 32
(-3) 		42.8
(-2.6) 		33.3
(-3) 		58.6
(-2.1) 		154.4
(1.3) 		203.1
(3) 		171
NetAffx Links Cluster Members
Consensus/Exemplar
GeneChip Array Information
Probe Set ID 183925_at
GeneChip Array C. elegans Genome Array
Organism Common Name Nematode
Probe Design Information
Transcript ID(Array Design) affy.Ce.859
Sequence Type Exemplar sequence
Representative Public ID B0511.8 NCBI
Target Description B0511.8 /REP_DB=WormBase Gene ID /WP=CE17347 /TR=O61818 /GB=AAC17649.1 /SUBMIT=ST.LOUIS /CHR=1 /FEA=Sanger Annotation
Annotation Method Description
Annotation Description This probe set was annotated using the Matching Probes based pipeline to a RefSeq identifier using 1 transcript(s).
Annotation Grade This is a grade A annotation.
Annotation Transcript Cluster (# of Matching Probes) NM_060381(11)
Transcript Assignments
Representative
Transcript		 Description Matching Probes Related Probesets by Grade
NM_060381 NCBI Caenorhabditis elegans B0511.13 (B0511.13) mRNA, complete cds. 11/11 None
GENEFINDER00000031176 ENSEMBL cdna:GeneFinder chromosome:CEL140:I:10641640:10647077:-1 11/11 None
B0511.13 ENSEMBL cdna:known chromosome:CEL140:I:10641640:10644138:-1 gene:B0511.13 11/11 None
Annotation Notes
Cross Hybridizing mRNA Matched Probes Nature of Assignment Related Probesets by Grade
SNAP00000031156 8/11 Cross Hyb Matching Probes None
Genomic Alignment of Consensus/Exemplar Sequence
Assembly Wormbase March 2004
Alignment(s)
Position Identity Coverage Cytoband
chrI:10641570-10647008(-) 99.09 100.0
Public Domain and Genome References
Gene Title
Ensembl B0511.13
Entrez Gene 172956 Entrez gene
SwissProt Q95X35 EMBL-EBI
WormBase CE32106 Wormbase
Functional Annotations
Ortholog
ID Title Organism
CANINE:1586251_AT similar to metallophosphoesterase 1 isoform a precursor cfa
CANINE_2:CFA.9403.1.A1_AT similar to metallophosphoesterase 1 isoform a precursor cfa
CANINE_2:CFAAFFX.28715.1.S1_AT similar to metallophosphoesterase 1 isoform a precursor cfa
CANINE_2:CFAAFFX.28716.1.S1_S_AT similar to metallophosphoesterase 1 isoform a precursor cfa
DROSOPHILA_2:1630877_A_AT dm
DROSGENOME1:146010_AT dm
CHICKEN:GGAAFFX.8779.1.S1_AT similar to metallophosphoesterase 1; metallo phosphoesterase gga
HG-U133_PLUS_2:213727_X_AT metallophosphoesterase 1 hs
HG-U133A_2:213727_X_AT metallophosphoesterase 1 hs
HG-U133A:213727_X_AT metallophosphoesterase 1 hs
HG-U133_PLUS_2:209858_X_AT metallophosphoesterase 1 hs
HG-U133A_2:209858_X_AT metallophosphoesterase 1 hs
HG-U133A:209858_X_AT metallophosphoesterase 1 hs
HG-U95AV2:40244_S_AT metallophosphoesterase 1 hs
HU35KSUBA:RC_AA205399_AT metallophosphoesterase 1 hs
HU35KSUBA:HUM_ALU_AT metallophosphoesterase 1 hs
HU35KSUBB:HUM_ALU_AT metallophosphoesterase 1 hs
HU35KSUBC:HUM_ALU_AT metallophosphoesterase 1 hs
HU35KSUBD:HUM_ALU_AT metallophosphoesterase 1 hs
HUGENEFL:HUM_ALU_AT metallophosphoesterase 1 hs
HC-G110:HUM_ALU_AT metallophosphoesterase 1 hs
HU35KSUBC:RC_AA599605_AT metallophosphoesterase 1 hs
HG-U133A:206764_X_AT metallophosphoesterase 1 hs
HG-U133_PLUS_2:206764_X_AT metallophosphoesterase 1 hs
HG-U133A_2:206764_X_AT metallophosphoesterase 1 hs
U133_X3P:G12751486_3P_S_AT metallophosphoesterase 1 hs
HG-U95E:82745_AT metallophosphoesterase 1 hs
HG-U95D:86141_AT metallophosphoesterase 1 hs
HG-U133_PLUS_2:213924_AT Metallophosphoesterase 1 hs
HG-U133A_2:213924_AT Metallophosphoesterase 1 hs
HG-U133A:213924_AT Metallophosphoesterase 1 hs
HU35KSUBB:RC_H05313_AT Metallophosphoesterase 1 hs
HU35KSUBC:RC_N37076_AT Metallophosphoesterase 1 hs
HU35KSUBD:RC_T15418_F_AT Metallophosphoesterase 1 hs
HU35KSUBD:RC_F10584_F_AT Metallophosphoesterase 1 hs
U133_X3P:HS.154145.3.A1_3P_AT Metallophosphoesterase 1 hs
HG-U133A_2:214071_AT Metallophosphoesterase 1 hs
HG-U133_PLUS_2:214071_AT Metallophosphoesterase 1 hs
HG-U133A:214071_AT Metallophosphoesterase 1 hs
MOUSE430_2:1440880_AT metallophosphoesterase 1 mm
MOE430B:1440880_AT metallophosphoesterase 1 mm
MU19KSUBC:TC41373_AT Metallophosphoesterase 1, mRNA (cDNA clone MGC:99965 IMAGE:4949311) mm
RG-U34C:RC_AI071330_AT metallophosphoesterase 1 (predicted) rn
RAE230B:1378394_AT metallophosphoesterase 1 (predicted) rn
RAT230_2:1378394_AT metallophosphoesterase 1 (predicted) rn
Gene Ontology
GO Biological Process (view graph)
ID Description Evidence Links
6118 electron transport inferred from electronic annotation QuickGO AmiGO
GO Molecular Function (view graph)
ID Description Evidence Links
5489 electron transporter activity inferred from electronic annotation QuickGO AmiGO
16787 hydrolase activity inferred from electronic annotation QuickGO AmiGO
20037 heme binding inferred from electronic annotation QuickGO AmiGO
Protein Similarities
Method ID Description E-Value
blast AAK95863 Hypothetical protein B0511.13 [Caenorhabditis elegans] ref|NP_492782.2| B0511.13 [Caenorhabditis elegans] 0.0
blast T33116 probable phosphoesterase (EC 3.1.-.-) B0511.8 - Caenorhabditis elegans 0.0
blast AAK95865 Hypothetical protein B0511.8 [Caenorhabditis elegans] ref|NP_492783.1| B0511.8 [Caenorhabditis elegans] 0.0
blast XP_625094 PREDICTED: similar to hypothetical protein [Apis mellifera] 5.0E-70
Protein Domains
Database ID Description E-Value
Pfam IPR004843 EMBL-EBI Metallo-phosphoesterase 6.4E-8
Pfam IPR004843 EMBL-EBI Metallo-phosphoesterase 6.4E-8
Pfam IPR010793 EMBL-EBI Mitochondrial 28S ribosomal S30 9.2E-8
Trans Membrane
ID Number Of Domains Domain Boundaries
NP_492782.2 3 7-29,319-341,354-376
B0511.13 3 7-29,319-341,354-376
GENEFINDER00000031176 3 539-561,849-871,886-908
Sequence
Target Sequence 
>C. ELEGANS:183925_AT
agatgttccggcaatgctgcttgttgttatcgatggagataatgtactagtgagcagctg
tcgtctcccctccgaaatactacaaattatggtatatatatttggcggcattggtatcct
cgcaaaaatgtataatgatctaattacaccggcaccactcgaatggaacgtgaacaatat
cgccgtctgcacagcaatcattctcgtcatgattatcaatgtcgttgctctcatcttcac
aattttctggtgcttgaggagcaaagatgagggaggagaaatagacagtaatggagtggt
catcaatcaattcgttgagccgaatattcgaatgaagttcaaaatgccgaaaatcagagg
tgatgcgattcatgatagttcacaggatgtcttcgaattgcgagttccaaggaatggaaa
tcaatttgatgcttgtcatgaacagacggttatcgtggctcggaacaagcgaagccgtac
gtattcagtcccactagaatctcggc

BLASTn GenBank NR
Probe Info
Probe Sequence(5'-3') Probe X Probe Y Probe Interrogation
Position 		Strandedness
AGATGTTCCGGCAATGCTGCTTGTT 687 67 2541 Antisense
GTACTAGTGAGCAGCTGTCGTCTCC 384 457 2584 Antisense
TCTCCCCTCCGAAATACTACAAATT 272 611 2604 Antisense
TTGGCGGCATTGGTATCCTCGCAAA 683 707 2642 Antisense
AATGATCTAATTACACCGGCACCAC 228 165 2674 Antisense
GTGAACAATATCGCCGTCTGCACAG 105 483 2710 Antisense
TCTGCACAGCAATCATTCTCGTCAT 409 609 2726 Antisense
TTATCAATGTCGTTGCTCTCATCTT 393 679 2753 Antisense
GAACAGACGGTTATCGTGGCTCGGA 334 351 2980 Antisense
AAGCGAAGCCGTACGTATTCAGTCC 534 147 3007 Antisense
TATTCAGTCCCACTAGAATCTCGGC 433 661 3022 Antisense
Sequence Source Affymetrix Proprietary Database