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[183924_at]

Description C18A3.7 /REP_DB=WormBase Gene ID /WP=CE01799 /TR=Q09960 /GB=AAA68374.1 /SUBMIT=ST.LOUIS /CHR=2 /FEA=Sanger Annotation
Cluster 6grp_total > 49      4grp_total > 08      6grp_total_sub > Cup      

Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 25
1 2 3 4 range
A 2.8
(-3)
A 		5.5
(-2.4)
A 		7.4
(-1.9)
A 		28
(3)
A 		25
B 6.1
(-1.2)
A 		4
(-3)
A 		11.1
(3)
A 		5.1
(-2.1)
A 		7
C 4.7
(-2.2)
A 		3.8
(-2.6)
A 		2.9
(-3)
A 		17.1
(3)
A 		14
avr 4.5
(-3) 		4.4
(-3) 		7.1
(-1.7) 		16.7
(3) 		12

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 40
1 2 3 4 5 6 range
A 36.7
(3)
A 		3
(-3)
A 		6
(-2.5)
A 		15.2
(-0.8)
A 		14.2
(-1)
A 		10.4
(-1.7)
A 		34
B 17.1
(-0.7)
A 		31.1
(1.4)
A 		4.3
(-2.6)
A 		1.7
(-3)
A 		15
(-1)
A 		41.6
(3)
A 		40
C 14.7
(1.4)
A 		2.1
(-3)
A 		2.4
(-2.9)
A 		10.6
(0)
A 		19.1
(3)
A 		11.8
(0.4)
A 		17
avr 22.8
(3) 		12.1
(-0.5) 		4.2
(-3) 		9.2
(-1.4) 		16.1
(0.8) 		21.3
(2.5) 		19
No Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 3
1 2 3 4 range
A 1
(-3)
A 		1.2
(-2.6)
A 		1.9
(-1.3)
A 		4.1
(3)
A 		3
B 1.9
(0.4)
A 		1
(-3)
A 		2.6
(3)
A 		1.1
(-2.6)
A 		2
C 1.5
(-1.4)
A 		1.1
(-2.7)
A 		1
(-3)
A 		2.9
(3)
A 		2
avr 1.5
(-1.5) 		1.1
(-3) 		1.8
(-0.4) 		2.7
(3) 		2

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 15
1 2 3 4 5 6 range
A 6.8
(3)
A 		1.1
(-3)
A 		1.3
(-2.8)
A 		3.9
(-0.1)
A 		4.3
(0.4)
A 		2.5
(-1.5)
A 		6
B 5.9
(-0.8)
A 		10.4
(1)
A 		1.1
(-2.7)
A 		0.4
(-3)
A 		6.1
(-0.7)
A 		15.5
(3)
A 		15
C 5.4
(2.1)
A 		0.6
(-3)
A 		0.6
(-3)
A 		2.1
(-1.4)
A 		6.2
(3)
A 		4
(0.6)
A 		6
avr 6
(1.8) 		4
(-0.1) 		1
(-3) 		2.1
(-2) 		5.5
(1.3) 		7.3
(3) 		6
NetAffx Links Cluster Members
Consensus/Exemplar
GeneChip Array Information
Probe Set ID 183924_at
GeneChip Array C. elegans Genome Array
Organism Common Name Nematode
Probe Design Information
Transcript ID(Array Design) affy.Ce.4879
Sequence Type Exemplar sequence
Representative Public ID C18A3.7 NCBI
Target Description C18A3.7 /REP_DB=WormBase Gene ID /WP=CE01799 /TR=Q09960 /GB=AAA68374.1 /SUBMIT=ST.LOUIS /CHR=2 /FEA=Sanger Annotation
Annotation Method Description
Annotation Description This probe set was annotated using the Matching Probes based pipeline to a RefSeq identifier using 1 transcript(s).
Annotation Grade This is a grade A annotation.
Annotation Transcript Cluster (# of Matching Probes) NM_062729(11)
Transcript Assignments
Representative
Transcript		 Description Matching Probes Related Probesets by Grade
NM_062729 NCBI Caenorhabditis elegans C18A3.7 (C18A3.7) mRNA, complete cds. 11/11 None
SNAP00000023268 ENSEMBL cdna:SNAP chromosome:CEL140:II:5729617:5730699:-1 11/11 None
GENEFINDER00000023275 ENSEMBL cdna:GeneFinder chromosome:CEL140:II:5729617:5730054:-1 11/11 None
C18A3.7 ENSEMBL cdna:known chromosome:CEL140:II:5729615:5730388:-1 gene:C18A3.7 11/11 None
Annotation Notes
There are no noteworthy cross hybridizing mRNAs found for this probe set.
Genomic Alignment of Consensus/Exemplar Sequence
Assembly Wormbase March 2004
Alignment(s)
Position Identity Coverage Cytoband
chrII:5729613-5730051(-) 100.0 100.0
Public Domain and Genome References
Gene Title
Ensembl C18A3.7
Entrez Gene 173972 Entrez gene
SwissProt Q09960 EMBL-EBI
WormBase CE01799 Wormbase
Functional Annotations
Protein Similarities
Method ID Description E-Value
blast AAA68374 Hypothetical protein C18A3.7 [Caenorhabditis elegans] ref|NP_495130.1| C18A3.7 [Caenorhabditis elegans] 4.0E-47
blast AAA68374 Hypothetical protein C18A3.7 [Caenorhabditis elegans] ref|NP_495130.1| C18A3.7 [Caenorhabditis elegans] 5.0E-47
blast CAE67393 Hypothetical protein CBG12878 [Caenorhabditis briggsae] 3.0E-16
Sequence
Target Sequence 
>C. ELEGANS:183924_AT
caccaagtttgcgcgccaagaagaaaactggcacggatagacagaagccgtctgtaaaac
aaaatgcatctcaaaactcaaagaagagtagcagacagaaaaagacccccagtgttggaa
aagaacgggaacaagcaacggataagaaacgagaaattgagaaaaaaccacaggaaaaga
ctgctttggatgagcagcaaaggaaagctcaaacggagactatcagcaacttggaaatcc
ttccggacaagaatcctgctaaaatggatgacggttat

BLASTn GenBank NR
Probe Info
Probe Sequence(5'-3') Probe X Probe Y Probe Interrogation
Position 		Strandedness
CACCAAGTTTGCGCGCCAAGAAGAA 507 201 44 Antisense
GGCACGGATAGACAGAAGCCGTCTG 524 535 73 Antisense
GAAGCCGTCTGTAAAACAAAATGCA 627 343 87 Antisense
AACAAAATGCATCTCAAAACTCAAA 340 135 101 Antisense
GACAGAAAAAGACCCCCAGTGTTGG 586 351 137 Antisense
GAACGGGAACAAGCAACGGATAAGA 643 345 166 Antisense
AACCACAGGAAAAGACTGCTTTGGA 219 147 209 Antisense
AAACGGAGACTATCAGCAACTTGGA 337 127 254 Antisense
GCAACTTGGAAATCCTTCCGGACAA 560 317 269 Antisense
ATCCTTCCGGACAAGAATCCTGCTA 576 39 280 Antisense
TCCTGCTAAAATGGATGACGGTTAT 153 593 297 Antisense
Sequence Source Affymetrix Proprietary Database