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[183920_s_at]

Description K02E7.9 /REP_DB=WormBase Gene ID /WP=CE11638 /TR=O17253 /GB=AAB71029.1 /SUBMIT=ST.LOUIS /CHR=2 /FEA=Sanger Annotation
Cluster 6grp_total > 67      4grp_total > 03      6grp_total_sub > Increase      6grp_rule_based > S6      

Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 105
1 2 3 4 range
A 25.6
(-2)
A 		9.4
(-3)
A 		12.8
(-2.8)
A 		109
(3)
A 		100
B 28.9
(3)
A 		25.9
(-0.6)
A 		24.4
(-2.4)
A 		23.9
(-3)
A 		5
C 5
(-2.9)
A 		5.8
(-2.8)
A 		3.7
(-3)
A 		72.4
(3)
A 		69
avr 19.8
(-2.3) 		13.7
(-3) 		13.6
(-3) 		68.4
(3) 		55

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 125
1 2 3 4 5 6 range
A 35.9
(-1.9)
A 		22.4
(-2.7)
A 		24.5
(-2.6)
A 		24.1
(-2.6)
A 		16.2
(-3)
A 		127.9
(3)
M 		112
B 4.4
(-2.9)
A 		5.3
(-2.9)
A 		46.8
(-0.5)
A 		3.1
(-3)
A 		43.9
(-0.6)
A 		107
(3)
P 		104
C 8.3
(-2.8)
A 		13.2
(-2.5)
A 		21.1
(-2.1)
A 		5.6
(-3)
A 		12.4
(-2.6)
A 		103.7
(3)
P 		98
avr 16.2
(-2.7) 		13.6
(-2.8) 		30.8
(-1.8) 		10.9
(-3) 		24.2
(-2.2) 		112.9
(3) 		102
No Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 15
1 2 3 4 range
A 9.3
(0.1)
A 		2
(-3)
A 		3.3
(-2.4)
A 		16
(3)
A 		14
B 9.2
(3)
A 		6.4
(-1.1)
A 		5.6
(-2.3)
A 		5.1
(-3)
A 		4
C 1.7
(-2.8)
A 		1.7
(-2.8)
A 		1.3
(-3)
A 		12.2
(3)
A 		11
avr 6.7
(-0.4) 		3.4
(-3) 		3.4
(-3) 		11.1
(3) 		8

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 39
1 2 3 4 5 6 range
A 6.6
(-2.6)
A 		8
(-2.3)
A 		5.3
(-2.9)
A 		6.1
(-2.7)
A 		4.9
(-3)
A 		31.1
(3)
M 		26
B 1.5
(-2.9)
A 		1.8
(-2.8)
A 		11.4
(-1.4)
A 		0.8
(-3)
A 		17.9
(-0.4)
A 		39.9
(3)
P 		39
C 3.1
(-2.6)
A 		4
(-2.5)
A 		5.4
(-2.2)
A 		1.1
(-3)
A 		4
(-2.5)
A 		34.7
(3)
P 		34
avr 3.7
(-2.8) 		4.6
(-2.6) 		7.4
(-2.1) 		2.7
(-3) 		8.9
(-1.9) 		35.2
(3) 		33
NetAffx Links Cluster Members
Consensus/Exemplar
Group Members
GeneChip Array Information
Probe Set ID 183920_s_at
GeneChip Array C. elegans Genome Array
Organism Common Name Nematode
Probe Design Information
Transcript ID(Array Design) affy.Ce.5791
Sequence Type Exemplar sequence
Representative Public ID K02E7.9 NCBI
Target Description K02E7.9 /REP_DB=WormBase Gene ID /WP=CE11638 /TR=O17253 /GB=AAB71029.1 /SUBMIT=ST.LOUIS /CHR=2 /FEA=Sanger Annotation
Annotation Method Description
Annotation Description This probe set was annotated using the Matching Probes based pipeline to a RefSeq identifier using 1 transcript(s).
Annotation Grade This is a grade A annotation.
Annotation Transcript Cluster (# of Matching Probes) NM_061501(11)
Transcript Assignments
Representative
Transcript		 Description Matching Probes Related Probesets by Grade
NM_061501 NCBI Caenorhabditis elegans K02E7.9 (K02E7.9) mRNA, complete cds. 11/11 None
SNAP00000023024 ENSEMBL cdna:SNAP chromosome:CEL140:II:1059719:1060754:-1 11/11 None
GENEFINDER00000023032 ENSEMBL cdna:GeneFinder chromosome:CEL140:II:1059719:1060754:-1 11/11 None
K02E7.9 ENSEMBL cdna:known chromosome:CEL140:II:1059719:1060808:-1 gene:K02E7.9 11/11 None
Annotation Notes
There are no noteworthy cross hybridizing mRNAs found for this probe set.
Genomic Alignment of Consensus/Exemplar Sequence
Assembly Wormbase March 2004
Alignment(s)
Position Identity Coverage Cytoband
chrII:1059717-1060753(-) 100.0 100.0
Public Domain and Genome References
Gene Title
Ensembl K02E7.9
Entrez Gene 173489 Entrez gene
SwissProt O17253 EMBL-EBI
WormBase CE11638 Wormbase
Functional Annotations
Gene Ontology
GO Molecular Function (view graph)
ID Description Evidence Links
5515 protein binding inferred from electronic annotation QuickGO AmiGO
Protein Similarities
Method ID Description E-Value
blast AAB71029 Hypothetical protein K02E7.9 [Caenorhabditis elegans] ref|NP_493902.1| K02E7.9 [Caenorhabditis elegans] 1.0E-172
blast AAB70996 Hypothetical protein M01D1.3 [Caenorhabditis elegans] ref|NP_493890.1| M01D1.3 [Caenorhabditis elegans] 1.0E-144
blast B88036 protein M01D1.3 [imported] - Caenorhabditis elegans 3.0E-70
Protein Domains
Database ID Description E-Value
Pfam IPR000210 EMBL-EBI BTB/POZ domain 9.6E-31
Sequence
Target Sequence 
>C. ELEGANS:183920_S_AT
tacattaatgcataccgctggtcgttttcgtttgatctaaaactccatcgctacccagcc
aagccacctcagatttctcatgacctcaatcctcaggtcaggtcttatgacacaatgttc
gagccgtccaggaagcacgatgcggtgctcttaatcggagagaagaagcttcatgtgaac
aaggctttcctctcctaccactccgactatttctgtgatctatttgctgagaaattcgat
gagaaaaacgggatccccatcgaaaacgtgacctatgagaatttcggacttctcatgagt
attatctaccctgaagcggctttctcgaatcatcaaaacgctgaagtccttctcgagctg
ggaaatcgtttcaagatcccagcagtgatgcgccacgtggaaaatcaaatcattcgagac
accaagttcccaaatgaacggttgatttttctggcagacaaatacgaacttcaaaagcta
ttggctatggaaatccagaagatggaaagcttcgatcaggctaagaagttcaaaggatct
gatgattactcgcagttatc

BLASTn GenBank NR
Probe Info
Probe Sequence(5'-3') Probe X Probe Y Probe Interrogation
Position 		Strandedness
TACATTAATGCATACCGCTGGTCGT 659 643 298 Antisense
ACCTCAGATTTCTCATGACCTCAAT 8 87 363 Antisense
ACCTCAATCCTCAGGTCAGGTCTTA 218 87 380 Antisense
CTACCACTCCGACTATTTCTGTGAT 486 225 492 Antisense
TGAGAAAAACGGGATCCCCATCGAA 128 569 537 Antisense
TTCTCATGAGTATTATCTACCCTGA 639 691 587 Antisense
AAATCGTTTCAAGATCCCAGCAGTG 474 117 660 Antisense
CCAGCAGTGATGCGCCACGTGGAAA 23 265 676 Antisense
ATCATTCGAGACACCAAGTTCCCAA 218 31 706 Antisense
ACGGTTGATTTTTCTGGCAGACAAA 359 95 735 Antisense
GATCTGATGATTACTCGCAGTTATC 242 419 833 Antisense
Sequence Source Affymetrix Proprietary Database