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[183919_s_at]

Description H38K22.1 /REP_DB=WormBase Gene ID /WP=CE18829 /TR=Q9XTF6 /GB=CAA90774.1 /SUBMIT=HINXTON /CHR=3 /FEA=Sanger Annotation
Cluster 6grp_highest_10_10 > 62      6grp_high1_10_10 > 36      4grp_highest_8_8 > 57      4grp_high_8_8 > 41      6grp_highest_nonorm > 50      6grp_total > 36      4grp_total > 46      6grp_highest_sub > Cu      6grp_cgc > 15      6grp_high1_sub > Cu      6grp_cgc_sub > Cu      6grp_total_sub > Cup      4grp_rule_based > L1      

Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 421
1 2 3 4 range
A 661.9
(3)
P 		340
(-1.7)
P 		350.3
(-1.6)
P 		253
(-3)
P 		409
B 640.3
(3)
P 		434.5
(-1.1)
P 		351.9
(-2.8)
P 		340.7
(-3)
P 		300
C 673.7
(3)
P 		487.6
(-0.1)
P 		330.1
(-2.8)
P 		317.4
(-3)
P 		356
avr 658.6
(3) 		420.7
(-1) 		344.1
(-2.3) 		303.7
(-3) 		355

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 275
1 2 3 4 5 6 range
A 567.4
(3)
P 		536.1
(2)
P 		421
(-1.8)
P 		385.1
(-3)
P 		392.8
(-2.7)
P 		456.8
(-0.6)
P 		182
B 548.2
(3)
P 		514.2
(2.1)
P 		503.4
(1.8)
P 		394.8
(-1)
P 		319.5
(-3)
P 		478.6
(1.2)
P 		229
C 594.8
(3)
P 		492.2
(0.6)
P 		375.9
(-2.2)
P 		452.6
(-0.4)
P 		340.3
(-3)
P 		457
(-0.2)
P 		255
avr 570.1
(3) 		514.2
(1.5) 		433.4
(-0.7) 		410.8
(-1.4) 		350.9
(-3) 		464.1
(0.1) 		219
No Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 204
1 2 3 4 range
A 241
(3)
P 		73.8
(-1.9)
P 		91.6
(-1.4)
P 		37
(-3)
P 		204
B 204.2
(3)
P 		107.3
(-1.4)
P 		81.6
(-2.6)
P 		72.6
(-3)
P 		132
C 223
(3)
P 		140.2
(0.1)
P 		115
(-0.8)
P 		53.5
(-3)
P 		170
avr 222.7
(3) 		107.1
(-1.1) 		96.1
(-1.5) 		54.4
(-3) 		168

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 130
1 2 3 4 5 6 range
A 104.6
(-2.2)
P 		190.7
(3)
P 		91.7
(-3)
P 		97.7
(-2.6)
P 		118.5
(-1.4)
P 		111.2
(-1.8)
P 		99
B 190.8
(3)
P 		171.2
(1.6)
P 		122.2
(-1.8)
P 		104.6
(-3)
P 		129.8
(-1.2)
P 		178.5
(2.1)
P 		86
C 220.5
(3)
P 		150.2
(-0.3)
P 		95.7
(-2.8)
P 		91
(-3)
P 		110.1
(-2.1)
P 		153
(-0.1)
P 		130
avr 172
(3) 		170.7
(2.9) 		103.2
(-2.6) 		97.8
(-3) 		119.5
(-1.2) 		147.6
(1) 		74
NetAffx Links Cluster Members
Consensus/Exemplar
Group Members
GeneChip Array Information
Probe Set ID 183919_s_at
GeneChip Array C. elegans Genome Array
Organism Common Name Nematode
Probe Design Information
Transcript ID(Array Design) affy.Ce.6448
Sequence Type Exemplar sequence
Representative Public ID H38K22.1 NCBI
Target Description H38K22.1 /REP_DB=WormBase Gene ID /WP=CE18829 /TR=Q9XTF6 /GB=CAA90774.1 /SUBMIT=HINXTON /CHR=3 /FEA=Sanger Annotation
Annotation Method Description
Annotation Description This probe set was annotated using the Matching Probes based pipeline to a RefSeq identifier using 1 transcript(s).
Annotation Grade This is a grade A annotation.
Annotation Transcript Cluster (# of Matching Probes) NM_065464(11)
Transcript Assignments
Representative
Transcript		 Description Matching Probes Related Probesets by Grade
NM_065464 NCBI Caenorhabditis elegans abnormal Eversion of VuLva family member (evl-14) (evl-14) mRNA, complete cds. 11/11 None
GENEFINDER00000016406 ENSEMBL cdna:GeneFinder chromosome:CEL140:III:4303205:4304607:-1 11/11 None
H38K22.1 ENSEMBL cdna:known chromosome:CEL140:III:4303074:4313094:-1 gene:H38K22.1 11/11 None
Annotation Notes
There are no noteworthy cross hybridizing mRNAs found for this probe set.
Genomic Alignment of Consensus/Exemplar Sequence
Assembly Wormbase March 2004
Alignment(s)
Position Identity Coverage Cytoband
chrIII:4303276-4313094(-) 99.81 100.0
Public Domain and Genome References
Gene Title
Gene Symbol evl-14
Ensembl H38K22.1
Entrez Gene 175555 Entrez gene
SwissProt Q9XTF6 EMBL-EBI
WormBase CE33526 Wormbase
Functional Annotations
Ortholog
ID Title Organism
ATH1-121501:248755_AT expressed protein at
CANINE_2:CFAAFFX.10519.1.S1_AT similar to androgen-induced prostate proliferative shutoff associated protein isoform 1 cfa
CANINE_2:CFAAFFX.10521.1.S1_S_AT similar to androgen-induced prostate proliferative shutoff associated protein isoform 1 cfa
DROSOPHILA_2:1623138_AT dm
DROSGENOME1:152467_AT dm
HG-U133_PLUS_2:1570023_AT androgen-induced proliferation inhibitor hs
HG-U133_PLUS_2:207956_X_AT androgen-induced proliferation inhibitor hs
HG-U133A:207956_X_AT androgen-induced proliferation inhibitor hs
HG-U133A_2:207956_X_AT androgen-induced proliferation inhibitor hs
HG-U133_PLUS_2:204742_S_AT androgen-induced proliferation inhibitor hs
HG-FOCUS:204742_S_AT androgen-induced proliferation inhibitor hs
HG-U133A:204742_S_AT androgen-induced proliferation inhibitor hs
HG-U133A_2:204742_S_AT androgen-induced proliferation inhibitor hs
HU35KSUBA:RC_AA447434_AT androgen-induced proliferation inhibitor hs
HU35KSUBA:W20070_AT androgen-induced proliferation inhibitor hs
HU35KSUBD:RC_F09972_AT androgen-induced proliferation inhibitor hs
U133_X3P:G7705287_3P_A_AT androgen-induced proliferation inhibitor hs
U133_X3P:G7657268_3P_A_AT androgen-induced proliferation inhibitor hs
U133_X3P:HS2.385696.1.S1_3P_X_AT androgen-induced proliferation inhibitor hs
U133_X3P:HS2.385696.1.S1_3P_AT androgen-induced proliferation inhibitor hs
U133_X3P:1570023_3P_AT androgen-induced proliferation inhibitor hs
HG-U95AV2:32641_AT androgen-induced proliferation inhibitor hs
HG-U95B:47661_AT androgen-induced proliferation inhibitor hs
HG-U133_PLUS_2:1570119_AT Androgen-induced proliferation inhibitor hs
U133_X3P:HS2.427579.1.S1_3P_AT Androgen-induced proliferation inhibitor hs
U133_X3P:HS2.382732.1.S1_3P_AT Androgen-induced proliferation inhibitor hs
U133_X3P:HS.288786.0.S1_3P_AT Androgen-induced proliferation inhibitor hs
HG-U133_PLUS_2:1554634_AT Androgen-induced proliferation inhibitor hs
HG-U133A_2:215888_AT Androgen-induced proliferation inhibitor hs
HG-U133_PLUS_2:215888_AT Androgen-induced proliferation inhibitor hs
HG-U133A:215888_AT Androgen-induced proliferation inhibitor hs
HG-U133_PLUS_2:229704_AT Androgen-induced proliferation inhibitor hs
HG-U133B:229704_AT Androgen-induced proliferation inhibitor hs
HG-U133_PLUS_2:242302_AT Androgen-induced proliferation inhibitor hs
HG-U133B:242302_AT Androgen-induced proliferation inhibitor hs
HG-U95B:41985_AT Androgen-induced proliferation inhibitor hs
HG-U95C:53281_AT Androgen-induced proliferation inhibitor hs
HG-U95D:68200_S_AT Androgen-induced proliferation inhibitor hs
HG-U95D:68203_R_AT Androgen-induced proliferation inhibitor hs
HG-U95D:88561_AT Androgen-induced proliferation inhibitor hs
HU35KSUBB:RC_AA143802_AT Androgen-induced proliferation inhibitor hs
HU35KSUBC:RC_R16833_AT Androgen-induced proliferation inhibitor hs
U133_X3P:HS.168625.2.A1_3P_AT Androgen-induced proliferation inhibitor hs
U133_X3P:HS.191905.0.A1_3P_AT Androgen-induced proliferation inhibitor hs
MU11KSUBA:AA177347_S_AT androgen-induced proliferation inhibitor mm
MG-U74AV2:104373_AT androgen-induced proliferation inhibitor mm
MG-U74BV2:107444_AT androgen-induced proliferation inhibitor mm
MG-U74CV2:133750_AT androgen-induced proliferation inhibitor mm
MOE430B:1435242_AT androgen-induced proliferation inhibitor mm
MOUSE430_2:1435242_AT androgen-induced proliferation inhibitor mm
MOE430B:1436161_AT androgen-induced proliferation inhibitor mm
MOUSE430_2:1436161_AT androgen-induced proliferation inhibitor mm
MOE430B:1441553_AT androgen-induced proliferation inhibitor mm
MOUSE430_2:1441553_AT androgen-induced proliferation inhibitor mm
MU19KSUBA:TC24398_AT Androgen-induced proliferation inhibitor, mRNA (cDNA clone MGC:106532 IMAGE:6405163) mm
MU19KSUBA:TC25167_AT Androgen-induced proliferation inhibitor, mRNA (cDNA clone MGC:106532 IMAGE:6405163) mm
MU19KSUBC:TC40086_AT Androgen-induced proliferation inhibitor, mRNA (cDNA clone MGC:106532 IMAGE:6405163) mm
RG-U34C:RC_AI229206_AT androgen-induced proliferation inhibitor (predicted) rn
RG-U34C:RC_AI172172_AT androgen-induced proliferation inhibitor (predicted) rn
RG-U34C:RC_AI071670_AT androgen-induced proliferation inhibitor (predicted) rn
RAE230A:1377100_AT androgen-induced proliferation inhibitor (predicted) rn
RAT230_2:1377100_AT androgen-induced proliferation inhibitor (predicted) rn
RAE230B:1395053_AT androgen-induced proliferation inhibitor (predicted) rn
RAT230_2:1395053_AT androgen-induced proliferation inhibitor (predicted) rn
RAE230B:1392891_AT androgen-induced proliferation inhibitor (predicted) rn
RAT230_2:1392891_AT androgen-induced proliferation inhibitor (predicted) rn
RAE230B:1392093_AT Androgen-induced proliferation inhibitor (predicted) rn
RAT230_2:1392093_AT Androgen-induced proliferation inhibitor (predicted) rn
YEAST_2:1769420_AT Protein required for establishment and maintenance of sister chromatid condensation and cohesion, colocalizes with cohesin on chromosomes in an interdependent manner, may function as a protein-protein interaction scaffold Sc
Protein Similarities
Method ID Description E-Value
blast CAA90774 Hypothetical protein H38K22.1 [Caenorhabditis elegans] emb|CAA19710.2| Hypothetical protein H38K22.1 [Caenorhabditis elegans] ref|NP_497865.2| abnormal Eversion of VuLva family member (evl-14) [Caenorhabditis elegans] 0.0
blast CAE71229 Hypothetical protein CBG18097 [Caenorhabditis briggsae] 0.0
blast CAA90774 Hypothetical protein H38K22.1 [Caenorhabditis elegans] emb|CAA19710.2| Hypothetical protein H38K22.1 [Caenorhabditis elegans] ref|NP_497865.2| abnormal Eversion of VuLva family member (evl-14) [Caenorhabditis elegans] 4.0E-97
blast CAH65185 hypothetical protein [Gallus gallus] ref|NP_001012845.1| hypothetical protein LOC418910 [Gallus gallus] 5.0E-55
blast CAE71229 Hypothetical protein CBG18097 [Caenorhabditis briggsae] 6.0E-23
Protein Domains
Trans Membrane
ID Number Of Domains Domain Boundaries
GENEFINDER00000016406 1 242-261
Sequence
Target Sequence 
>C. ELEGANS:183919_S_AT
gagctgctccagactcaacaattgcatcatcgtcctcaaatggctcaattctgaaaaatg
gaagtggtccatcaccgaaaaaacggaattccagaggatcggttaaaggacgacagaaca
gtacgaaggaagctgaaattgatgtggattcagatgaagaaatggaagaaataactgaaa
aacgagataatgtgtcgcttgataatctcataatttcgccgattttggatgaatcgtctg
gaagaacgcgccgaagtgctcgaacgattgccgccacagcaacaatcacttcttcaactc
cattagtgcccacaaaaccgaaaattacaaaacggaaaagatcagaggctgtcgtggaag
aagttgaagacgaagaaccagagattaatgataaaaaatcaccatctccgaaaaaacgag
tttctggaagacgatctgctccaactccaactaaaaatagtaaaaaagcaccagtttcac
ccaaaaagaag

BLASTn GenBank NR
Probe Info
Probe Sequence(5'-3') Probe X Probe Y Probe Interrogation
Position 		Strandedness
GAGCTGCTCCAGACTCAACAATTGC 521 387 4127 Antisense
CTCAACAATTGCATCATCGTCCTCA 602 227 4140 Antisense
CATCGTCCTCAAATGGCTCAATTCT 445 209 4154 Antisense
GATAATCTCATAATTTCGCCGATTT 112 423 4327 Antisense
GCCGAAGTGCTCGAACGATTGCCGC 476 285 4376 Antisense
CGATTGCCGCCACAGCAACAATCAC 28 249 4391 Antisense
CACTTCTTCAACTCCATTAGTGCCC 673 195 4413 Antisense
ACTCCATTAGTGCCCACAAAACCGA 493 97 4423 Antisense
GATCAGAGGCTGTCGTGGAAGAAGT 431 421 4466 Antisense
TCTGGAAGACGATCTGCTCCAACTC 654 607 4549 Antisense
AGCACCAGTTTCACCCAAAAAGAAG 129 69 4593 Antisense
Sequence Source Affymetrix Proprietary Database