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[183918_s_at]

Description T24H7.2 /REP_DB=WormBase Gene ID /WP=CE02884 /TR=Q22758 /GB=AAA68352.1 /SUBMIT=ST.LOUIS /CHR=2 /FEA=Sanger Annotation
Cluster 6grp_highest_10_10 > 66      6grp_high1_10_10 > 75      4grp_highest_8_8 > 30      4grp_high_8_8 > 07      6grp_highest_nonorm > 72      6grp_total > 75      4grp_total > 01      6grp_highest_sub > Da      

Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 735
1 2 3 4 range
A 324.7
(-0.8)
P 		211.5
(-3)
P 		295.8
(-1.3)
P 		515.3
(3)
P 		304
B 321.1
(-2.1)
P 		207.8
(-3)
P 		259.7
(-2.6)
P 		942.5
(3)
P 		735
C 343.5
(-1.4)
P 		207.6
(-3)
P 		328.4
(-1.6)
P 		728.7
(3)
P 		521
avr 329.8
(-1.6) 		209
(-3) 		294.6
(-2) 		728.8
(3) 		520

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 281
1 2 3 4 5 6 range
A 328.2
(-1.1)
P 		300.5
(-3)
P 		389.4
(3)
P 		386.3
(2.8)
P 		327
(-1.2)
P 		364.2
(1.3)
P 		89
B 346
(-2.2)
P 		316.2
(-3)
P 		489.8
(1.6)
P 		430.9
(0.1)
P 		372.3
(-1.5)
P 		540.8
(3)
P 		225
C 380.3
(-1.1)
P 		375.6
(-1.2)
P 		291.6
(-3)
P 		475.8
(0.9)
P 		334.3
(-2.1)
P 		572.9
(3)
P 		281
avr 351.5
(-2.2) 		330.8
(-3) 		390.3
(-0.8) 		431
(0.7) 		344.5
(-2.5) 		492.6
(3) 		162
No Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 155
1 2 3 4 range
A 118.2
(3)
P 		45.9
(-3)
P 		77.3
(-0.4)
P 		75.4
(-0.6)
P 		72
B 102.4
(-1)
P 		51.3
(-3)
P 		60.2
(-2.6)
P 		200.9
(3)
P 		150
C 113.7
(2.1)
P 		59.7
(-3)
P 		114.5
(2.2)
P 		122.9
(3)
P 		63
avr 111.4
(1.4) 		52.3
(-3) 		84
(-0.6) 		133.1
(3) 		81

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 141
1 2 3 4 5 6 range
A 60.5
(-3)
P 		106.9
(3)
P 		84.8
(0.1)
P 		98
(1.8)
P 		98.7
(1.9)
P 		88.7
(0.6)
P 		46
B 120.4
(-2.1)
P 		105.2
(-3)
P 		118.9
(-2.1)
P 		114.1
(-2.4)
P 		151.3
(-0.1)
P 		201.7
(3)
P 		97
C 141
(0.4)
P 		114.6
(-0.9)
P 		74.2
(-3)
P 		95.7
(-1.9)
P 		108.2
(-1.3)
P 		191.8
(3)
P 		118
avr 107.3
(-1.7) 		108.9
(-1.6) 		92.6
(-3) 		102.6
(-2.1) 		119.4
(-0.6) 		160.7
(3) 		68
NetAffx Links Cluster Members
Consensus/Exemplar
Group Members
GeneChip Array Information
Probe Set ID 183918_s_at
GeneChip Array C. elegans Genome Array
Organism Common Name Nematode
Probe Design Information
Transcript ID(Array Design) affy.Ce.5273
Sequence Type Exemplar sequence
Representative Public ID T24H7.2 NCBI
Target Description T24H7.2 /REP_DB=WormBase Gene ID /WP=CE02884 /TR=Q22758 /GB=AAA68352.1 /SUBMIT=ST.LOUIS /CHR=2 /FEA=Sanger Annotation
Annotation Method Description
Annotation Description This probe set was annotated using the Matching Probes based pipeline to a RefSeq identifier using 1 transcript(s).
Annotation Grade This is a grade A annotation.
Annotation Transcript Cluster (# of Matching Probes) NM_062848(11)
Transcript Assignments
Representative
Transcript		 Description Matching Probes Related Probesets by Grade
NM_062848 NCBI Caenorhabditis elegans T24H7.2 (T24H7.2) mRNA, complete cds. 11/11 None
SNAP00000031001 ENSEMBL cdna:SNAP chromosome:CEL140:II:6247265:6250566:1 11/11 None
GENEFINDER00000031005 ENSEMBL cdna:GeneFinder chromosome:CEL140:II:6247265:6250566:1 11/11 None
T24H7.2.2 ENSEMBL cdna:known chromosome:CEL140:II:6247258:6250773:1 gene:T24H7.2 11/11 None
T24H7.2.1 ENSEMBL cdna:known chromosome:CEL140:II:6247260:6250790:1 gene:T24H7.2 11/11 None
Annotation Notes
There are no noteworthy cross hybridizing mRNAs found for this probe set.
Genomic Alignment of Consensus/Exemplar Sequence
Assembly Wormbase March 2004
Alignment(s)
Position Identity Coverage Cytoband
chrII:6247261-6250563(+) 97.73 100.0
Public Domain and Genome References
Gene Title
Ensembl T24H7.2
Entrez Gene 174033 Entrez gene
SwissProt Q22758 EMBL-EBI
WormBase CE02884 Wormbase
Functional Annotations
Gene Ontology
GO Biological Process (view graph)
ID Description Evidence Links
6118 electron transport inferred from electronic annotation QuickGO AmiGO
GO Cellular Component (view graph)
ID Description Evidence Links
16020 membrane inferred from electronic annotation QuickGO AmiGO
GO Molecular Function (view graph)
ID Description Evidence Links
16491 oxidoreductase activity inferred from electronic annotation QuickGO AmiGO
Protein Similarities
Method ID Description E-Value
blast AAA68352 Hypothetical protein T24H7.2 [Caenorhabditis elegans] ref|NP_495249.1| T24H7.2 [Caenorhabditis elegans] 0.0
blast CAE59272 Hypothetical protein CBG02604 [Caenorhabditis briggsae] 0.0
Protein Domains
Database ID Description E-Value
Pfam IPR001023 EMBL-EBI Heat shock protein Hsp70 2.5E-50
Trans Membrane
ID Number Of Domains Domain Boundaries
NP_495249.1 1 7-29
T24H7.2.2 1 7-29
T24H7.2.1 1 7-29
SNAP00000031001 1 7-29
GENEFINDER00000031005 1 7-29
Sequence
Target Sequence 
>C. ELEGANS:183918_S_AT
gaattcgtgcttggctcgaagacgatgtgacgaaagatacaccaacgaaggatttcacag
ataatttgctcgaattgaagaatgttgtacggagtgtgaaaaagagacaagaacacgaca
aggcagttccagagaagttgaagagcttggagactcttctggaaaccactttctcattga
ccactttgggtaacaatgttgacgaggagaaggcactattcaaaaaggaagaccgtgacg
gtttgaaatctaaattggacaaactgaaaatttgggtcacagatgttcggaaacacctag
atttgaagaagaaaacagatgatttcaacttcactggaaaagatattgacaccaagacca
aaaatctgaaccgtgaagtagatcgattcatgaagaaaatgaagaagatcacaacattgg
acgatcttgccaaagacggaaaaattgatatcgacaccattgtag

BLASTn GenBank NR
Probe Info
Probe Sequence(5'-3') Probe X Probe Y Probe Interrogation
Position 		Strandedness
GAATTCGTGCTTGGCTCGAAGACGA 177 325 2213 Antisense
GATACACCAACGAAGGATTTCACAG 581 423 2248 Antisense
GGATTTCACAGATAATTTGCTCGAA 619 509 2262 Antisense
AACACGACAAGGCAGTTCCAGAGAA 141 135 2324 Antisense
GAGACTCTTCTGGAAACCACTTTCT 565 393 2362 Antisense
ACCACTTTCTCATTGACCACTTTGG 538 85 2377 Antisense
GACCGTGACGGTTTGAAATCTAAAT 96 383 2443 Antisense
AAATTTGGGTCACAGATGTTCGGAA 507 113 2480 Antisense
AACAGATGATTTCAACTTCACTGGA 327 137 2526 Antisense
ATCACAACATTGGACGATCTTGCCA 368 27 2620 Antisense
AAAATTGATATCGACACCATTGTAG 252 133 2653 Antisense
Sequence Source Affymetrix Proprietary Database