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[183916_at]

Description B0414.4 /REP_DB=WormBase Gene ID /WP=CE07734 /TR=O01832 /GB=AAB57716.1 /SUBMIT=ST.LOUIS /CHR=1 /FEA=Sanger Annotation
Cluster 6grp_highest_10_10 > 04      6grp_high1_10_10 > 32      4grp_high_8_8 > 53      6grp_highest_nonorm > 80      6grp_total > 31      4grp_total > 58      6grp_high1_sub > 02_03      6grp_total_sub > Hat      6grp_rule_based > S3      4grp_rule_based > L2      

Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 234
1 2 3 4 range
A 148.2
(-0.6)
P 		271.3
(3)
P 		136.1
(-0.9)
P 		65.6
(-3)
A 		206
B 84.1
(-1.7)
P 		182.2
(3)
P 		172.4
(2.5)
P 		56.6
(-3)
A 		126
C 163.1
(-0.3)
P 		190.4
(0.4)
P 		290.8
(3)
P 		56.4
(-3)
P 		234
avr 131.8
(-0.2) 		214.6
(3) 		199.8
(2.4) 		59.5
(-3) 		155

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 264
1 2 3 4 5 6 range
A 169.9
(-0.5)
P 		266.6
(1.7)
P 		323
(3)
P 		188.5
(-0.1)
P 		174.6
(-0.4)
P 		58.6
(-3)
P 		264
B 242.6
(1.7)
P 		291.2
(3)
P 		273.8
(2.5)
P 		239.4
(1.6)
P 		250.1
(1.9)
P 		72.1
(-3)
P 		219
C 244
(1.8)
P 		283
(3)
P 		259.1
(2.2)
P 		257.3
(2.2)
P 		168.4
(-0.7)
P 		95
(-3)
P 		188
avr 218.8
(1.1) 		280.3
(2.9) 		285.3
(3) 		228.4
(1.4) 		197.7
(0.5) 		75.2
(-3) 		210
No Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 92
1 2 3 4 range
A 53.9
(2.4)
P 		58.9
(3)
P 		35.6
(0.2)
P 		9.6
(-3)
A 		49
B 26.8
(-0.3)
P 		45
(3)
P 		39.9
(2.1)
P 		12.1
(-3)
A 		33
C 54
(-0.1)
P 		54.7
(-0)
P 		101.4
(3)
P 		9.5
(-3)
P 		92
avr 44.9
(1.3) 		52.9
(2.2) 		59
(3) 		10.4
(-3) 		49

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 87
1 2 3 4 5 6 range
A 31.3
(-1.7)
P 		94.8
(3)
P 		70.3
(1.2)
P 		47.8
(-0.5)
P 		52.7
(-0.1)
P 		14.3
(-3)
P 		81
B 84.4
(1.6)
P 		96.9
(2.6)
P 		66.5
(0.2)
P 		63.4
(-0.1)
P 		101.6
(3)
P 		26.9
(-3)
P 		75
C 90.4
(3)
P 		86.4
(2.6)
P 		65.9
(0.5)
P 		51.8
(-1)
P 		54.5
(-0.7)
P 		31.8
(-3)
P 		59
avr 68.7
(0.9) 		92.7
(3) 		67.6
(0.8) 		54.3
(-0.4) 		69.6
(1) 		24.3
(-3) 		68
NetAffx Links Cluster Members
Consensus/Exemplar
GeneChip Array Information
Probe Set ID 183916_at
GeneChip Array C. elegans Genome Array
Organism Common Name Nematode
Probe Design Information
Transcript ID(Array Design) affy.Ce.916
Sequence Type Exemplar sequence
Representative Public ID B0414.4 NCBI
Target Description B0414.4 /REP_DB=WormBase Gene ID /WP=CE07734 /TR=O01832 /GB=AAB57716.1 /SUBMIT=ST.LOUIS /CHR=1 /FEA=Sanger Annotation
Annotation Method Description
Annotation Description This probe set was annotated using the Matching Probes based pipeline to a RefSeq identifier using 1 transcript(s).
Annotation Grade This is a grade A annotation.
Annotation Transcript Cluster (# of Matching Probes) NM_059275(10), NM_170869(10)
Transcript Assignments
Representative
Transcript		 Description Matching Probes Related Probesets by Grade
NM_059275 NCBI Caenorhabditis elegans T22E7.1a (T22E7.1) mRNA, complete cds. 10/11 A 
NM_170869 NCBI Caenorhabditis elegans T22E7.1b (T22E7.1) mRNA, complete cds. 10/11 A 
GENEFINDER00000011726 ENSEMBL cdna:GeneFinder chromosome:CEL140:I:5780650:5781590:1 11/11 None
T22E7.1a ENSEMBL cdna:known chromosome:CEL140:I:5777099:5781723:1 gene:T22E7.1 10/11 A 
T22E7.1b ENSEMBL cdna:known chromosome:CEL140:I:5777156:5781740:1 gene:T22E7.1 10/11 A 
Annotation Notes
Cross Hybridizing mRNA Matched Probes Nature of Assignment Related Probesets by Grade
SNAP00000011708 3/11 Cross Hyb Matching Probes None
Genomic Alignment of Consensus/Exemplar Sequence
Assembly Wormbase March 2004
Alignment(s)
Position Identity Coverage Cytoband
chrI:5780649-5781033(+) 100.0 100.0
Public Domain and Genome References
Ensembl T22E7.1
Functional Annotations
Protein Similarities
Method ID Description E-Value
blast AAF39970 Hypothetical protein T22E7.1a [Caenorhabditis elegans] ref|NP_491676.2| T22E7.1a [Caenorhabditis elegans] 0.0
blast AAO21400 Hypothetical protein T22E7.1b [Caenorhabditis elegans] ref|NP_740857.2| T22E7.1b [Caenorhabditis elegans] 1.0E-170
blast AAO21400 Hypothetical protein T22E7.1b [Caenorhabditis elegans] ref|NP_740857.2| T22E7.1b [Caenorhabditis elegans] 1.0E-168
blast AAF39970 Hypothetical protein T22E7.1a [Caenorhabditis elegans] ref|NP_491676.2| T22E7.1a [Caenorhabditis elegans] 1.0E-168
blast CAE67386 Hypothetical protein CBG12871 [Caenorhabditis briggsae] 1.0E-84
Protein Domains
Database ID Description E-Value
Pfam IPR000483 EMBL-EBI Cysteine-rich flanking region, C-terminal 8.7E-5
Pfam IPR001611 EMBL-EBI Leucine-rich repeat 0.17
Pfam IPR001611 EMBL-EBI Leucine-rich repeat 0.32
Pfam IPR000483 EMBL-EBI Cysteine-rich flanking region, C-terminal 8.7E-5
Trans Membrane
ID Number Of Domains Domain Boundaries
NP_491676.2 1 291-310
T22E7.1a 1 291-310
GENEFINDER00000011726 1 88-107
Sequence
Target Sequence 
>C. ELEGANS:183916_AT
tacaatttgtttccagattccagctgatatttgggattttcttccgtctctttcatcctt
ggatatttcaaataatccaattgattgtgattgtgcaactattcgattgcttagcgggga
tgatgtcgtatttctaaatcaggctgatacaaaatgtgcatctccaccagaattggaagg
caaacgcatttttgaactatcgagagactattgcaaaactacaaggaatccacgtgggaa
agcatcattcttccagtttctc

BLASTn GenBank NR
Probe Info
Probe Sequence(5'-3') Probe X Probe Y Probe Interrogation
Position 		Strandedness
TACAATTTGTTTCCAGATTCCAGCT 98 643 33 Antisense
TATTTGGGATTTTCTTCCGTCTCTT 543 661 60 Antisense
GATTGTGATTGTGCAACTATTCGAT 264 435 115 Antisense
CAACTATTCGATTGCTTAGCGGGGA 391 161 128 Antisense
AGCGGGGATGATGTCGTATTTCTAA 645 79 145 Antisense
GTCGTATTTCTAAATCAGGCTGATA 226 473 157 Antisense
AAATGTGCATCTCCACCAGAATTGG 510 119 184 Antisense
GGCAAACGCATTTTTGAACTATCGA 373 535 211 Antisense
GAACTATCGAGAGACTATTGCAAAA 706 349 226 Antisense
GGAATCCACGTGGGAAAGCATCATT 213 531 257 Antisense
GAAAGCATCATTCTTCCAGTTTCTC 673 359 270 Antisense
Sequence Source Affymetrix Proprietary Database