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[183915_at]

Description M01G4.1 /REP_DB=WormBase Gene ID /WP=CE02829 /TR=Q21457 /GB=AAC46537.1 /SUBMIT=ST.LOUIS /CHR=3 /FEA=Sanger Annotation
Cluster 6grp_total > 70      4grp_total > 19      6grp_total_sub > Hat      

Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 88
1 2 3 4 range
A 3.9
(-3)
A 		10.5
(-2.5)
A 		9.2
(-2.6)
A 		90.1
(3)
A 		86
B 2.2
(-3)
A 		15.3
(3)
A 		4.1
(-2.1)
A 		2.7
(-2.8)
A 		13
C 28.4
(1.7)
A 		35.3
(3)
A 		3.4
(-3)
A 		27.5
(1.5)
A 		32
avr 11.5
(-2) 		20.4
(-0.4) 		5.6
(-3) 		40.1
(3) 		35

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 62
1 2 3 4 5 6 range
A 27.4
(1.2)
A 		33.9
(2.4)
A 		35.7
(2.7)
A 		37.3
(3)
A 		4.6
(-3)
A 		28.3
(1.3)
A 		33
B 3.9
(-3)
A 		6.6
(-2)
A 		6.2
(-2.1)
A 		10.4
(-0.5)
A 		19.7
(3)
A 		4.1
(-2.9)
A 		16
C 2.8
(-3)
A 		12.2
(-2.1)
A 		3.1
(-3)
A 		64.8
(3)
A 		3.2
(-3)
A 		4.8
(-2.8)
A 		62
avr 11.4
(-2.5) 		17.6
(-1.2) 		15
(-1.8) 		37.5
(3) 		9.2
(-3) 		12.4
(-2.3) 		28
No Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 13
1 2 3 4 range
A 1.4
(-3)
A 		2.3
(-2.5)
A 		2.4
(-2.5)
A 		13.2
(3)
A 		12
B 0.7
(-2.8)
A 		3.8
(3)
A 		1
(-2.3)
A 		0.6
(-3)
A 		3
C 9.4
(2.5)
A 		10.2
(3)
A 		1.2
(-3)
A 		4.6
(-0.7)
A 		9
avr 3.8
(0) 		5.4
(2.1) 		1.5
(-3) 		6.1
(3) 		5

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 12
1 2 3 4 5 6 range
A 5
(-1)
A 		12.1
(3)
A 		7.8
(0.6)
A 		9.5
(1.5)
A 		1.4
(-3)
A 		6.9
(0.1)
A 		11
B 1.3
(-3)
A 		2.2
(-2.2)
A 		1.5
(-2.8)
A 		2.7
(-1.7)
A 		8
(3)
A 		1.5
(-2.8)
A 		7
C 1.1
(-2.9)
A 		3.7
(-1.6)
A 		0.8
(-3)
A 		13
(3)
A 		1
(-2.9)
A 		1.6
(-2.6)
A 		12
avr 2.5
(-3) 		6
(0.6) 		3.4
(-2.1) 		8.4
(3) 		3.5
(-2) 		3.3
(-2.2) 		6
NetAffx Links Cluster Members
Consensus/Exemplar
GeneChip Array Information
Probe Set ID 183915_at
GeneChip Array C. elegans Genome Array
Organism Common Name Nematode
Probe Design Information
Transcript ID(Array Design) affy.Ce.6417
Sequence Type Exemplar sequence
Representative Public ID M01G4.1 NCBI
Target Description M01G4.1 /REP_DB=WormBase Gene ID /WP=CE02829 /TR=Q21457 /GB=AAC46537.1 /SUBMIT=ST.LOUIS /CHR=3 /FEA=Sanger Annotation
Annotation Method Description
Annotation Description This probe set was annotated using the Matching Probes based pipeline to a RefSeq identifier using 1 transcript(s).
Annotation Grade This is a grade A annotation.
Annotation Transcript Cluster (# of Matching Probes) NM_066065(11)
Transcript Assignments
Representative
Transcript		 Description Matching Probes Related Probesets by Grade
NM_066065 NCBI Caenorhabditis elegans M01G4.1 (M01G4.1) mRNA, complete cds. 11/11 None
M01G4.1 ENSEMBL cdna:known chromosome:CEL140:III:6664895:6665309:-1 gene:M01G4.1 11/11 None
Annotation Notes
There are no noteworthy cross hybridizing mRNAs found for this probe set.
Genomic Alignment of Consensus/Exemplar Sequence
Assembly Wormbase March 2004
Alignment(s)
Position Identity Coverage Cytoband
chrIII:6664893-6665308(-) 100.0 100.0
Public Domain and Genome References
Gene Title
Ensembl M01G4.1
Entrez Gene 187376 Entrez gene
SwissProt Q21457 EMBL-EBI
WormBase CE02829 Wormbase
Functional Annotations
Protein Similarities
Method ID Description E-Value
blast AAC46537 Hypothetical protein M01G4.1 [Caenorhabditis elegans] ref|NP_498466.1| M01G4.1 [Caenorhabditis elegans] 2.0E-21
Sequence
Target Sequence 
>C. ELEGANS:183915_AT
gattgatcaggtttgggcggacgggttccgtcgttatgctggagtacgaatcgttgccca
taccattgattacggtgacaagattttggttaaaattcgcaagcaacgcaataattcgac
ccaacagaagcccagtatttcttcgttcattaggtca

BLASTn GenBank NR
Probe Info
Probe Sequence(5'-3') Probe X Probe Y Probe Interrogation
Position 		Strandedness
GATTGATCAGGTTTGGGCGGACGGG 98 435 18 Antisense
GGGTTCCGTCGTTATGCTGGAGTAC 359 497 40 Antisense
GCTGGAGTACGAATCGTTGCCCATA 273 295 55 Antisense
ACGAATCGTTGCCCATACCATTGAT 676 91 63 Antisense
GTTGCCCATACCATTGATTACGGTG 585 439 70 Antisense
GATTACGGTGACAAGATTTTGGTTA 552 427 85 Antisense
GTTAAAATTCGCAAGCAACGCAATA 93 447 106 Antisense
GCAACGCAATAATTCGACCCAACAG 280 321 120 Antisense
TCGACCCAACAGAAGCCCAGTATTT 103 603 133 Antisense
AAGCCCAGTATTTCTTCGTTCATTA 25 149 145 Antisense
CAGTATTTCTTCGTTCATTAGGTCA 671 205 150 Antisense
Sequence Source Affymetrix Proprietary Database