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[183914_s_at]

Description R08E3.3 /REP_DB=WormBase Gene ID /WP=CE04824 /TR=Q21848 /GB=AAC48196.1 /SUBMIT=ST.LOUIS /CHR=X /FEA=Sanger Annotation
Cluster 6grp_high1_10_10 > 40      4grp_high_8_8 > 02      6grp_total > 43      4grp_total > 31      6grp_high1_sub > 03      

Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 124
1 2 3 4 range
A 156.1
(3)
P 		148.5
(1.7)
P 		120.6
(-3)
P 		150.7
(2.1)
A 		36
B 170.4
(3)
P 		62.7
(-3)
P 		97
(-1.1)
P 		74.8
(-2.3)
A 		108
C 156.7
(0.9)
P 		98.8
(-3)
P 		129.3
(-0.9)
P 		187
(3)
P 		88
avr 161.1
(3) 		103.3
(-3) 		115.6
(-1.7) 		137.5
(0.6) 		58

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 149
1 2 3 4 5 6 range
A 97.1
(-1.2)
P 		146.1
(3)
P 		121.6
(0.9)
P 		129.6
(1.6)
P 		75.5
(-3)
A 		88.8
(-1.9)
A 		71
B 136.2
(-0.2)
P 		113.7
(-1.1)
P 		215.9
(3)
P 		150.4
(0.4)
P 		66.5
(-3)
P 		92
(-2)
P 		149
C 158.4
(3)
P 		122.4
(0.3)
P 		155.8
(2.8)
P 		79.8
(-3)
A 		121.6
(0.2)
P 		102.3
(-1.3)
P 		79
avr 130.6
(0.3) 		127.4
(0.1) 		164.4
(3) 		119.9
(-0.5) 		87.9
(-3) 		94.4
(-2.5) 		77
No Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 41
1 2 3 4 range
A 56.8
(3)
P 		32.2
(-1.3)
P 		31.5
(-1.4)
P 		22.1
(-3)
A 		35
B 54.3
(3)
P 		15.5
(-3)
P 		22.5
(-1.9)
P 		15.9
(-2.9)
A 		39
C 51.9
(3)
P 		28.4
(-3)
P 		45.1
(1.3)
P 		31.5
(-2.2)
P 		24
avr 54.3
(3) 		25.4
(-2.6) 		33
(-1.1) 		23.2
(-3) 		31

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 43
1 2 3 4 5 6 range
A 17.9
(-3)
P 		52
(3)
P 		26.5
(-1.5)
P 		32.9
(-0.4)
P 		22.8
(-2.1)
A 		21.6
(-2.3)
A 		34
B 47.4
(1.8)
P 		37.8
(-0.4)
P 		52.4
(3)
P 		39.8
(0)
P 		27
(-3)
P 		34.3
(-1.3)
P 		25
C 58.7
(3)
P 		37.3
(-0)
P 		39.7
(0.3)
P 		16
(-3)
A 		39.3
(0.3)
P 		34.2
(-0.4)
P 		43
avr 41.3
(2.5) 		42.4
(3) 		39.5
(1.6) 		29.6
(-3) 		29.7
(-3) 		30
(-2.8) 		13
NetAffx Links Cluster Members
Consensus/Exemplar
Group Members
GeneChip Array Information
Probe Set ID 183914_s_at
GeneChip Array C. elegans Genome Array
Organism Common Name Nematode
Probe Design Information
Transcript ID(Array Design) affy.Ce.16452
Sequence Type Exemplar sequence
Representative Public ID R08E3.3 NCBI
Target Description R08E3.3 /REP_DB=WormBase Gene ID /WP=CE04824 /TR=Q21848 /GB=AAC48196.1 /SUBMIT=ST.LOUIS /CHR=X /FEA=Sanger Annotation
Annotation Method Description
Annotation Description This probe set was annotated using the Matching Probes based pipeline to a RefSeq identifier using 1 transcript(s).
Annotation Grade This is a grade A annotation.
Annotation Transcript Cluster (# of Matching Probes) NM_001029678(10)
Transcript Assignments
Representative
Transcript		 Description Matching Probes Related Probesets by Grade
NM_001029678 NCBI Caenorhabditis elegans R08E3.3b (R08E3.3) mRNA, complete cds. 10/11 None
SNAP00000006863 ENSEMBL cdna:SNAP chromosome:CEL140:X:4818586:4821379:1 10/11 None
GENEFINDER00000006868 ENSEMBL cdna:GeneFinder chromosome:CEL140:X:4818586:4821379:1 10/11 None
R08E3.3b ENSEMBL cdna:known chromosome:CEL140:X:4818567:4821660:1 gene:R08E3.3 10/11 None
Annotation Notes
Cross Hybridizing mRNA Matched Probes Nature of Assignment Related Probesets by Grade
NM_001029677 5/11 Cross Hyb Matching Probes None
R08E3.3a 5/11 Cross Hyb Matching Probes None
Splice Variants
Entrez Total Refseq Isoforms Total Detected By This Probeset Refseq Probesets
180757 2 1 NM_001029678 183914_s_at (10)
Genomic Alignment of Consensus/Exemplar Sequence
Assembly Wormbase March 2004
Alignment(s)
Position Identity Coverage Cytoband
chrX:4818586-4821380(+) 100.0 100.0
Public Domain and Genome References
Ensembl R08E3.3
Functional Annotations
Protein Similarities
Method ID Description E-Value
blast AAQ82846 Hypothetical protein R08E3.3b [Caenorhabditis elegans] ref|NP_001024849.1| R08E3.3b [Caenorhabditis elegans] 0.0
blast AAC48196 Hypothetical protein R08E3.3a [Caenorhabditis elegans] ref|NP_001024848.1| R08E3.3a [Caenorhabditis elegans] 0.0
blast CAE68653 Hypothetical protein CBG14550 [Caenorhabditis briggsae] 0.0
Sequence
Target Sequence 
>C. ELEGANS:183914_S_AT
gtgcaaagcatgtacgtactcgagcaaagaagtaaagaactggatgcgatggttcggaaa
caagagcaagacatggtgaaaatgcaagaggaacggcatgcactccgaaagcaagaagaa
cgagaaagcgaggcggtcaacagatcgtttgctatcatctacaatattcttcttcagaag
aattttcagtatctatttatgagcggccttcattgcgatcattatcgtggacgcctggcc
atggaatcattcacacgaattcatttgtattgcatggagattctggagatgttaagagaa
aacggtgctctgaaacaagcagttggaatccttcaatcagagatttatgtcgaggagcag
aagcagtacgacaaacagtttgaactgttgcatcaggactatcaagaaatcagcgacttg
aatgaccaactgttttctgaaatccgtctcaa

BLASTn GenBank NR
Probe Info
Probe Sequence(5'-3') Probe X Probe Y Probe Interrogation
Position 		Strandedness
GTGCAAAGCATGTACGTACTCGAGC 228 481 1114 Antisense
GAGGAACGGCATGCACTCCGAAAGC 294 405 1201 Antisense
GAAAGCGAGGCGGTCAACAGATCGT 350 359 1237 Antisense
AACAGATCGTTTGCTATCATCTACA 191 137 1252 Antisense
TATCATCTACAATATTCTTCTTCAG 473 659 1266 Antisense
TCAGTATCTATTTATGAGCGGCCTT 588 623 1299 Antisense
GCGATCATTATCGTGGACGCCTGGC 697 289 1328 Antisense
CGCCTGGCCATGGAATCATTCACAC 12 257 1345 Antisense
GAACTGTTGCATCAGGACTATCAAG 296 349 1495 Antisense
GCGACTTGAATGACCAACTGTTTTC 179 289 1526 Antisense
AACTGTTTTCTGAAATCCGTCTCAA 589 141 1541 Antisense
Sequence Source Affymetrix Proprietary Database