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[183913_s_at]

Description T10E9.3 /REP_DB=WormBase Gene ID /WP=CE13547 /TR=O01603 /GB=AAB52471.1 /SUBMIT=ST.LOUIS /CHR=1 /FEA=Sanger Annotation
Cluster 6grp_highest_10_10 > 89      6grp_high1_10_10 > 99      4grp_high_8_8 > 60      6grp_highest_nonorm > 94      6grp_total > 99      4grp_total > 60      6grp_highest_sub > In      6grp_total_sub > Increase      6grp_rule_based > S5      4grp_rule_based > L3      

Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 203
1 2 3 4 range
A 249.5
(2.3)
P 		203.7
(0.8)
P 		270.1
(3)
P 		86.4
(-3)
P 		184
B 234.1
(1.8)
P 		237.3
(1.9)
P 		273.7
(3)
P 		79.4
(-3)
A 		194
C 225.7
(1.2)
P 		282
(3)
P 		281.5
(3)
P 		90.5
(-3)
P 		192
avr 236.4
(1.8) 		241
(1.9) 		275.1
(3) 		85.4
(-3) 		190

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 925
1 2 3 4 5 6 range
A 181.5
(-3)
P 		298.9
(-2.2)
P 		216.3
(-2.8)
P 		387.5
(-1.5)
P 		1019.3
(3)
P 		945.2
(2.5)
P 		838
B 220.1
(-2.9)
P 		251.2
(-2.7)
P 		204.1
(-3)
P 		373.3
(-1.9)
P 		1106.8
(3)
P 		923.2
(1.8)
P 		903
C 240.4
(-3)
P 		247.8
(-2.9)
P 		237.4
(-3)
P 		375
(-2)
P 		1065.9
(3)
P 		912.3
(1.9)
P 		829
avr 214
(-3) 		266
(-2.6) 		219.3
(-3) 		378.6
(-1.8) 		1064
(3) 		926.9
(2) 		850
No Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 86
1 2 3 4 range
A 90.8
(3)
P 		44.2
(-0.6)
P 		70.6
(1.5)
P 		12.6
(-3)
P 		78
B 74.6
(3)
P 		58.6
(1.3)
P 		63.4
(1.8)
P 		16.9
(-3)
A 		58
C 74.7
(1.3)
P 		81.1
(1.8)
P 		98.1
(3)
P 		15.3
(-3)
P 		83
avr 80
(3) 		61.3
(1.3) 		77.4
(2.8) 		14.9
(-3) 		65

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 416
1 2 3 4 5 6 range
A 33.4
(-3)
P 		106.3
(-1.4)
P 		47.1
(-2.7)
P 		98.3
(-1.6)
P 		307.6
(3)
P 		230.1
(1.3)
P 		274
B 76.6
(-2.6)
P 		83.6
(-2.5)
P 		49.6
(-3)
P 		98.9
(-2.3)
P 		449.7
(3)
P 		344.3
(1.4)
P 		400
C 89.1
(-2.4)
P 		75.6
(-2.7)
P 		60.4
(-3)
P 		75.4
(-2.7)
P 		344.9
(3)
P 		305.4
(2.2)
P 		285
avr 66.4
(-2.7) 		88.5
(-2.3) 		52.4
(-3) 		90.9
(-2.3) 		367.4
(3) 		293.3
(1.6) 		315
NetAffx Links Cluster Members
Consensus/Exemplar
Group Members
GeneChip Array Information
Probe Set ID 183913_s_at
GeneChip Array C. elegans Genome Array
Organism Common Name Nematode
Probe Design Information
Transcript ID(Array Design) affy.Ce.1827
Sequence Type Exemplar sequence
Representative Public ID T10E9.3 NCBI
Target Description T10E9.3 /REP_DB=WormBase Gene ID /WP=CE13547 /TR=O01603 /GB=AAB52471.1 /SUBMIT=ST.LOUIS /CHR=1 /FEA=Sanger Annotation
Annotation Method Description
Annotation Description This probe set was annotated using the Matching Probes based pipeline to a RefSeq identifier using 1 transcript(s).
Annotation Grade This is a grade A annotation.
Annotation Transcript Cluster (# of Matching Probes) NM_059481(11)
Transcript Assignments
Representative
Transcript		 Description Matching Probes Related Probesets by Grade
NM_059481 NCBI Caenorhabditis elegans T10E9.3 (T10E9.3) mRNA, complete cds. 11/11 None
SNAP00000042992 ENSEMBL cdna:SNAP chromosome:CEL140:I:6543619:6547163:1 11/11 None
GENEFINDER00000043001 ENSEMBL cdna:GeneFinder chromosome:CEL140:I:6543626:6547163:1 11/11 None
T10E9.3 ENSEMBL cdna:known chromosome:CEL140:I:6542206:6547163:1 gene:T10E9.3 11/11 None
Annotation Notes
There are no noteworthy cross hybridizing mRNAs found for this probe set.
Genomic Alignment of Consensus/Exemplar Sequence
Assembly Wormbase March 2004
Alignment(s)
Position Identity Coverage Cytoband
chrI:6542179-6547092(+) 100.0 100.0
Public Domain and Genome References
Gene Title
Ensembl T10E9.3
Entrez Gene 172364 Entrez gene
SwissProt O01603 EMBL-EBI
WormBase CE30171 Wormbase
Functional Annotations
Gene Ontology
GO Biological Process (view graph)
ID Description Evidence Links
6584 catecholamine metabolism inferred from electronic annotation QuickGO AmiGO
GO Molecular Function (view graph)
ID Description Evidence Links
4500 dopamine beta-monooxygenase activity inferred from electronic annotation QuickGO AmiGO
Protein Similarities
Method ID Description E-Value
blast AAB52471 Hypothetical protein T10E9.3 [Caenorhabditis elegans] ref|NP_491882.2| T10E9.3 [Caenorhabditis elegans] 0.0
blast CAE67230 Hypothetical protein CBG12669 [Caenorhabditis briggsae] 0.0
Protein Domains
Database ID Description E-Value
Pfam IPR005018 EMBL-EBI DOMON domain 1.1E-9
Pfam IPR005018 EMBL-EBI DOMON domain 3.4E-25
Pfam IPR005018 EMBL-EBI DOMON domain 5.7E-9
Pfam IPR005018 EMBL-EBI DOMON domain 3.4E-25
Pfam IPR005018 EMBL-EBI DOMON domain 1.1E-9
Pfam IPR005018 EMBL-EBI DOMON domain 3.4E-25
Sequence
Target Sequence 
>C. ELEGANS:183913_S_AT
gttctggacttcctgtaacaccgaaaattgagaatgaagaaccaaagtctacaccacata
cagcagaagttgcagatgagcatccattgactggagttgatgctccaagttctgttacgt
catcatcatcttcatcatcttctttgtcaactgctggccctcaattagtgtcttcttcaa
ccccaattcctgtaccaatgacccctgaaaaaaatcatgtcttcgaagtcgataatcaaa
caaccaaaacagtgagtgaagaaccgaaaaaagaagaaacagaaaagatcaatgatgcac
cagaagttacaacaccaagagctggaagtcatggagatggaagtaaaaatggttgtggag
cagaacatgaagacttgaaaatttgtgaatcctactttgccgagtatttgggaaaagtta
acgattggtctgaaaagcataatatgacagtgacaagtcatatgtggaaggcgtgcactt
tactgtcccaagttcaacatgtgacaacaatgtgctgtacaattttccga

BLASTn GenBank NR
Probe Info
Probe Sequence(5'-3') Probe X Probe Y Probe Interrogation
Position 		Strandedness
GTTCTGGACTTCCTGTAACACCGAA 358 443 1160 Antisense
GAACCAAAGTCTACACCACATACAG 570 345 1198 Antisense
GATGAGCATCCATTGACTGGAGTTG 510 411 1234 Antisense
GAGTTGATGCTCCAAGTTCTGTTAC 34 399 1253 Antisense
CAAGTTCTGTTACGTCATCATCATC 583 183 1265 Antisense
GCCCTCAATTAGTGTCTTCTTCAAC 662 285 1316 Antisense
GATGCACCAGAAGTTACAACACCAA 554 411 1453 Antisense
ATTTGTGAATCCTACTTTGCCGAGT 689 15 1540 Antisense
GTGGAAGGCGTGCACTTTACTGTCC 542 489 1623 Antisense
TTTACTGTCCCAAGTTCAACATGTG 453 671 1638 Antisense
AACAATGTGCTGTACAATTTTCCGA 25 135 1665 Antisense
Sequence Source Affymetrix Proprietary Database