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[183912_at]

Description T10C6.6A /REP_DB=WormBase Gene ID /WP=CE16381 /TR=O62376 /GB=CAB07662.1 /SUBMIT=HINXTON /CHR=5 /FEA=Sanger Annotation
Cluster 6grp_highest_10_10 > 88      6grp_high1_10_10 > 88      4grp_highest_8_8 > 13      4grp_high_8_8 > 23      6grp_highest_nonorm > 94      6grp_total > 87      4grp_total > 16      6grp_highest_sub > Da      6grp_high1_sub > Da      6grp_total_sub > Increase      6grp_rule_based > S6      4grp_rule_based > L4      

Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 755
1 2 3 4 range
A 585.1
(-3)
P 		904.8
(-0.1)
P 		1058.6
(1.3)
P 		1246.4
(3)
P 		661
B 681.1
(-3)
P 		782.9
(-2.1)
P 		1003.1
(-0)
P 		1333.4
(3)
P 		652
C 578.9
(-3)
P 		762
(-1.5)
P 		803.3
(-1.2)
P 		1326.9
(3)
P 		748
avr 615
(-3) 		816.6
(-1.2) 		955
(-0) 		1302.2
(3) 		687

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 716
1 2 3 4 5 6 range
A 542
(-1.9)
P 		570
(-1.7)
P 		417.9
(-3)
P 		638.5
(-1.1)
P 		588.7
(-1.5)
P 		1122.5
(3)
P 		705
B 480.3
(-3)
P 		487.1
(-2.9)
P 		495.9
(-2.7)
P 		555.4
(-1.4)
P 		734.5
(2.5)
P 		759.3
(3)
P 		279
C 517.9
(-1.6)
P 		406.5
(-3)
P 		613.2
(-0.4)
P 		472.4
(-2.2)
P 		762.9
(1.5)
P 		877.6
(3)
P 		471
avr 513.4
(-2.6) 		487.9
(-3) 		509
(-2.7) 		555.4
(-2.1) 		695.4
(-0.1) 		919.8
(3) 		432
No Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 102
1 2 3 4 range
A 213
(-1.1)
P 		196.4
(-2.1)
P 		276.7
(3)
P 		182.5
(-3)
P 		94
B 217.2
(-1.4)
P 		193.4
(-3)
P 		232.4
(-0.4)
P 		284.1
(3)
P 		91
C 191.6
(-3)
P 		219.1
(-1.1)
P 		280
(3)
P 		223.7
(-0.8)
P 		88
avr 207.3
(-2.6) 		203
(-3) 		263
(3) 		230.1
(-0.3) 		60

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 207
1 2 3 4 5 6 range
A 99.9
(-2.7)
P 		202.7
(0.7)
P 		91
(-3)
P 		161.9
(-0.7)
P 		177.6
(-0.1)
P 		273.3
(3)
P 		182
B 167.1
(-1.4)
P 		162.1
(-1.6)
P 		120.4
(-3)
P 		147.1
(-2.1)
P 		298.4
(3)
P 		283.1
(2.5)
P 		178
C 192
(-0.1)
P 		124
(-2.1)
P 		156.1
(-1.2)
P 		95
(-3)
P 		246.9
(1.6)
P 		293.8
(3)
P 		199
avr 153
(-1.9) 		162.9
(-1.5) 		122.5
(-3) 		134.7
(-2.5) 		241
(1.4) 		283.4
(3) 		161
NetAffx Links Cluster Members
Consensus/Exemplar
GeneChip Array Information
Probe Set ID 183912_at
GeneChip Array C. elegans Genome Array
Organism Common Name Nematode
Probe Design Information
Transcript ID(Array Design) affy.Ce.14708
Sequence Type Exemplar sequence
Representative Public ID T10C6.6A NCBI
Target Description T10C6.6A /REP_DB=WormBase Gene ID /WP=CE16381 /TR=O62376 /GB=CAB07662.1 /SUBMIT=HINXTON /CHR=5 /FEA=Sanger Annotation
Annotation Method Description
Annotation Description This probe set was annotated using the Matching Probes based pipeline to a RefSeq identifier using 1 transcript(s).
Annotation Grade This is a grade A annotation.
Annotation Transcript Cluster (# of Matching Probes) NM_074624(11), NM_074625(11)
Transcript Assignments
Representative
Transcript		 Description Matching Probes Related Probesets by Grade
NM_074624 NCBI Caenorhabditis elegans T10C6.6a (T10C6.6) mRNA, complete cds. 11/11 None
NM_074625 NCBI Caenorhabditis elegans T10C6.6b (T10C6.6) mRNA, complete cds. 11/11 None
SNAP00000027905 ENSEMBL cdna:SNAP chromosome:CEL140:V:16026920:16029814:1 11/11 None
GENEFINDER00000027923 ENSEMBL cdna:GeneFinder chromosome:CEL140:V:16026920:16029814:1 11/11 None
T10C6.6a.1 ENSEMBL cdna:known chromosome:CEL140:V:16026901:16030028:1 gene:T10C6.6 11/11 None
T10C6.6a.3 ENSEMBL cdna:known chromosome:CEL140:V:16026909:16030028:1 gene:T10C6.6 11/11 None
T10C6.6a.2 ENSEMBL cdna:known chromosome:CEL140:V:16026920:16030028:1 gene:T10C6.6 11/11 None
T10C6.6b.2 ENSEMBL cdna:known chromosome:CEL140:V:16026929:16029814:1 gene:T10C6.6 11/11 None
T10C6.6b.3 ENSEMBL cdna:known chromosome:CEL140:V:16026958:16029814:1 gene:T10C6.6 11/11 None
T10C6.6b.1 ENSEMBL cdna:known chromosome:CEL140:V:16027518:16029814:1 gene:T10C6.6 11/11 None
Annotation Notes
There are no noteworthy cross hybridizing mRNAs found for this probe set.
Genomic Alignment of Consensus/Exemplar Sequence
Assembly Wormbase March 2004
Alignment(s)
Position Identity Coverage Cytoband
chrV:16026919-16029814(+) 100.0 100.0
Public Domain and Genome References
Ensembl T10C6.6
Functional Annotations
Protein Similarities
Method ID Description E-Value
blast CAB07662 Hypothetical protein T10C6.6a [Caenorhabditis elegans] ref|NP_507025.1| T10C6.6a [Caenorhabditis elegans] 0.0
blast CAE74810 Hypothetical protein CBG22645 [Caenorhabditis briggsae] 0.0
blast CAB60295 Hypothetical protein T10C6.6b [Caenorhabditis elegans] ref|NP_507026.1| T10C6.6b [Caenorhabditis elegans] 0.0
Protein Domains
Database ID Description E-Value
Pfam IPR005828 EMBL-EBI General substrate transporter 1.8E-4
Pfam IPR005828 EMBL-EBI General substrate transporter 1.8E-4
Trans Membrane
ID Number Of Domains Domain Boundaries
NP_507025.1 12 9-26,62-84,91-111,121-143,156-178,183-205,243-265,285-302,309-328,333-355,376-398,408-430
NP_507026.1 10 20-42,52-74,87-109,114-136,174-196,216-233,240-259,264-286,307-329,339-361
T10C6.6a.1 12 9-26,62-84,91-111,121-143,156-178,183-205,243-265,285-302,309-328,333-355,376-398,408-430
T10C6.6a.3 12 9-26,62-84,91-111,121-143,156-178,183-205,243-265,285-302,309-328,333-355,376-398,408-430
T10C6.6a.2 12 9-26,62-84,91-111,121-143,156-178,183-205,243-265,285-302,309-328,333-355,376-398,408-430
T10C6.6b.2 10 20-42,52-74,87-109,114-136,174-196,216-233,240-259,264-286,307-329,339-361
T10C6.6b.3 10 20-42,52-74,87-109,114-136,174-196,216-233,240-259,264-286,307-329,339-361
T10C6.6b.1 10 20-42,52-74,87-109,114-136,174-196,216-233,240-259,264-286,307-329,339-361
SNAP00000027905 12 9-26,62-84,91-111,121-143,156-178,183-205,243-265,285-302,309-328,333-355,376-398,408-430
GENEFINDER00000027923 12 9-26,62-84,91-111,121-143,156-178,183-205,243-265,285-302,309-328,333-355,376-398,408-430
Sequence
Target Sequence 
>C. ELEGANS:183912_AT
ctgcctgaaactcgtcaactacgccttctttttctggcttccactctacttgaccgatgc
ctatcactgggaagagtcgcaggcggatcagttgagcatttggtacgattttggaggcat
tattggaagtgtgctcggcggatacattactgacaagatgggaaaacgatctccgctcat
cgtcgcgatgctcgtgtgctccattggctcgctgtacttttacgctcacgtcgggccgca
catgttctggaatgcggtcgtcatgaccaccgtcggagttacagtctctgggccgtacaa
cttgatcgttgggtccatctcaatcgatctaggatcacaacctgctctagctgggaacac
acaggcgatgtccacggtgtcgggattgttggatggcactggatcggcaggatccgctgt
tggacagcttctcattccgatcatccaggacgacctgggatggaaggctgtgttctatgt
gttcatgc

BLASTn GenBank NR
Probe Info
Probe Sequence(5'-3') Probe X Probe Y Probe Interrogation
Position 		Strandedness
CTGCCTGAAACTCGTCAACTACGCC 236 237 768 Antisense
TTGACCGATGCCTATCACTGGGAAG 395 705 817 Antisense
GAGTCGCAGGCGGATCAGTTGAGCA 61 401 841 Antisense
GTGCTCGGCGGATACATTACTGACA 634 479 898 Antisense
CCGTCGGAGTTACAGTCTCTGGGCC 210 263 1037 Antisense
TCTCTGGGCCGTACAACTTGATCGT 7 611 1052 Antisense
TGATCGTTGGGTCCATCTCAATCGA 695 565 1070 Antisense
ATCACAACCTGCTCTAGCTGGGAAC 155 27 1101 Antisense
CACACAGGCGATGTCCACGGTGTCG 25 195 1125 Antisense
CATTCCGATCATCCAGGACGACCTG 190 213 1200 Antisense
AAGGCTGTGTTCTATGTGTTCATGC 410 161 1231 Antisense
Sequence Source Affymetrix Proprietary Database