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[183911_at]

Description T19A5.3 /REP_DB=WormBase Gene ID /WP=CE07511 /TR=Q22552 /GB=AAC69039.1 /SUBMIT=ST.LOUIS /CHR=5 /FEA=Sanger Annotation
Cluster 6grp_total > 92      4grp_total > 57      4grp_rule_based > L3      

Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 690
1 2 3 4 range
A 60.2
(-2.5)
A 		486.3
(1.9)
P 		593.5
(3)
P 		12.1
(-3)
A 		581
B 79.8
(-2.4)
A 		659.7
(3)
P 		606.1
(2.5)
P 		11.1
(-3)
A 		649
C 38
(-3)
A 		625.9
(2.3)
P 		701.1
(3)
P 		64.7
(-2.8)
A 		663
avr 59.3
(-2.7) 		590.6
(2.6) 		633.6
(3) 		29.3
(-3) 		604

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 403
1 2 3 4 5 6 range
A 187.8
(-3)
A 		388.4
(0.6)
P 		250.3
(-1.9)
P 		423.2
(1.3)
P 		519.4
(3)
P 		227.5
(-2.3)
P 		332
B 142
(-3)
A 		422.1
(2)
P 		261.2
(-0.9)
P 		454.2
(2.5)
P 		480.3
(3)
P 		179.3
(-2.3)
P 		338
C 158.5
(-3)
A 		378.8
(0.4)
P 		302
(-0.8)
P 		391.9
(0.6)
P 		544.7
(3)
P 		175.8
(-2.7)
P 		386
avr 162.8
(-3) 		396.4
(1) 		271.2
(-1.2) 		423.1
(1.4) 		514.8
(3) 		194.2
(-2.5) 		352
No Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 243
1 2 3 4 range
A 21.9
(-2.2)
A 		105.6
(1.1)
P 		155.1
(3)
P 		1.8
(-3)
A 		153
B 25.5
(-2.1)
A 		162.9
(3)
P 		140.4
(2.2)
P 		2.4
(-3)
A 		161
C 12.6
(-3)
A 		180
(1.3)
P 		244.4
(3)
P 		10.9
(-3)
A 		234
avr 20
(-2.5) 		149.5
(2) 		180
(3) 		5
(-3) 		175

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 161
1 2 3 4 5 6 range
A 34.6
(-3)
A 		138.1
(2.1)
P 		54.5
(-2)
P 		107.3
(0.6)
P 		156.7
(3)
P 		55.4
(-2)
P 		122
B 49.4
(-3)
A 		140.5
(0.8)
P 		63.4
(-2.4)
P 		120.3
(-0.1)
P 		195.1
(3)
P 		66.9
(-2.3)
P 		146
C 58.8
(-3)
A 		115.6
(-0.1)
P 		76.9
(-2.1)
P 		78.8
(-2)
P 		176.3
(3)
P 		58.8
(-3)
P 		118
avr 47.6
(-3) 		131.4
(0.9) 		64.9
(-2.2) 		102.1
(-0.5) 		176
(3) 		60.4
(-2.4) 		128
NetAffx Links Cluster Members
Consensus/Exemplar
GeneChip Array Information
Probe Set ID 183911_at
GeneChip Array C. elegans Genome Array
Organism Common Name Nematode
Probe Design Information
Transcript ID(Array Design) affy.Ce.12058
Sequence Type Exemplar sequence
Representative Public ID T19A5.3 NCBI
Target Description T19A5.3 /REP_DB=WormBase Gene ID /WP=CE07511 /TR=Q22552 /GB=AAC69039.1 /SUBMIT=ST.LOUIS /CHR=5 /FEA=Sanger Annotation
Annotation Method Description
Annotation Description This probe set was annotated using the Matching Probes based pipeline to a RefSeq identifier using 1 transcript(s).
Annotation Grade This is a grade A annotation.
Annotation Transcript Cluster (# of Matching Probes) NM_001028971(11)
Transcript Assignments
Representative
Transcript		 Description Matching Probes Related Probesets by Grade
NM_001028971 NCBI Caenorhabditis elegans T19A5.3a (T19A5.3) mRNA, complete cds. 11/11 None
SNAP00000024597 ENSEMBL cdna:SNAP chromosome:CEL140:V:8942526:8945965:-1 11/11 None
GENEFINDER00000024606 ENSEMBL cdna:GeneFinder chromosome:CEL140:V:8942526:8946609:-1 11/11 None
T19A5.3a ENSEMBL cdna:known chromosome:CEL140:V:8942205:8946650:-1 gene:T19A5.3 11/11 None
Annotation Notes
There are no noteworthy cross hybridizing mRNAs found for this probe set.
Splice Variants
Entrez Total Refseq Isoforms Total Detected By This Probeset Refseq Probesets
179273 2 1 NM_001028971 183911_at (11)
Genomic Alignment of Consensus/Exemplar Sequence
Assembly Wormbase March 2004
Alignment(s)
Position Identity Coverage Cytoband
chrV:8942348-8945549(-) 97.65 100.0
Public Domain and Genome References
Ensembl T19A5.3
Functional Annotations
Protein Similarities
Method ID Description E-Value
blast AAC69039 Hypothetical protein T19A5.3a [Caenorhabditis elegans] ref|NP_001024142.1| T19A5.3a [Caenorhabditis elegans] 0.0
blast CAE72052 Hypothetical protein CBG19137 [Caenorhabditis briggsae] 0.0
blast CAE72052 Hypothetical protein CBG19137 [Caenorhabditis briggsae] 1.0E-158
blast CAE72052 Hypothetical protein CBG19137 [Caenorhabditis briggsae] 1.0E-145
blast AAQ91899 Hypothetical protein T19A5.3b [Caenorhabditis elegans] ref|NP_001024143.1| T19A5.3b [Caenorhabditis elegans] 1.0E-126
Sequence
Target Sequence 
>C. ELEGANS:183911_AT
cactggagaatcggcactctctcgttccaagggaccaactggagacggatacggaccccc
agtattcccaggcggagctcccccaccaccagttccagctgttggtcttggaggtgccgc
agcagggaagtctccatacagtggacaagaagttgatcaagttgaaaatactggaacaac
tgtaaaaccatcggctcttttgagtgttttaagcaaggccgacacaggattcaaccaagt
tattgatcattttgagaacggaactccaccagaggcagctttcattgatattttggaagt
ggctctcggatctcaaaaactagattcacaggctaaattgttgggtcatgttgatagaac
aattggattagataatcttcaaagacttcaaagatgggctaatactgctggagctatgga

BLASTn GenBank NR
Probe Info
Probe Sequence(5'-3') Probe X Probe Y Probe Interrogation
Position 		Strandedness
CACTGGAGAATCGGCACTCTCTCGT 395 199 1650 Antisense
TCTCTCGTTCCAAGGGACCAACTGG 68 605 1667 Antisense
ACTGGAGACGGATACGGACCCCCAG 525 95 1687 Antisense
TCTTGGAGGTGCCGCAGCAGGGAAG 544 607 1755 Antisense
GCAGCAGGGAAGTCTCCATACAGTG 586 311 1768 Antisense
AAAACCATCGGCTCTTTTGAGTGTT 174 129 1833 Antisense
GCAAGGCCGACACAGGATTCAACCA 598 321 1862 Antisense
TGAGAACGGAACTCCACCAGAGGCA 674 545 1902 Antisense
CTCCACCAGAGGCAGCTTTCATTGA 689 235 1913 Antisense
TTTTGGAAGTGGCTCTCGGATCTCA 192 677 1940 Antisense
GGGCTAATACTGCTGGAGCTATGGA 525 491 2045 Antisense
Sequence Source Affymetrix Proprietary Database