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[183910_at]

Description R13G10.4 /REP_DB=WormBase Gene ID /WP=CE03570 /TR=Q18498 /GB=CAA84672.1 /SUBMIT=HINXTON /CHR=3 /FEA=Sanger Annotation
Cluster 6grp_total > 49      4grp_total > 42      6grp_total_sub > Cup      

Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 27
1 2 3 4 range
A 5.9
(-3)
A 		30
(3)
A 		7.5
(-2.6)
A 		8.5
(-2.4)
A 		24
B 3.1
(-3)
A 		4
(-1.2)
A 		6.1
(3)
A 		5
(0.8)
A 		3
C 3.6
(-3)
A 		4.1
(-2.5)
A 		9.6
(3)
A 		9
(2.4)
A 		6
avr 4.2
(-3) 		12.7
(3) 		7.7
(-0.5) 		7.5
(-0.7) 		9

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 17
1 2 3 4 5 6 range
A 18.9
(3)
A 		3.1
(-3)
A 		4.8
(-2.4)
A 		5.6
(-2.1)
A 		9.7
(-0.5)
A 		4.1
(-2.6)
A 		16
B 3.7
(-2.4)
A 		4
(-2.3)
A 		3.8
(-2.4)
A 		2.2
(-3)
A 		2.8
(-2.8)
A 		17.9
(3)
A 		16
C 6.3
(3)
A 		3.2
(-2.8)
A 		4.6
(-0.2)
A 		4
(-1.3)
A 		6.3
(3)
A 		3.1
(-3)
A 		3
avr 9.6
(3) 		3.4
(-3) 		4.4
(-2) 		3.9
(-2.5) 		6.3
(-0.2) 		8.4
(1.8) 		6
No Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 6
1 2 3 4 range
A 2.2
(-1.9)
A 		6.5
(3)
A 		1.9
(-2.2)
A 		1.2
(-3)
A 		5
B 1
(-3)
A 		1
(-3)
A 		1.4
(3)
A 		1.1
(-1.5)
A 		0
C 1.2
(-3)
A 		1.2
(-3)
A 		3.3
(3)
A 		1.5
(-2.1)
A 		2
avr 1.5
(-2.3) 		2.9
(3) 		2.2
(0.4) 		1.3
(-3) 		2

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 6
1 2 3 4 5 6 range
A 3.5
(3)
A 		1.1
(-2.8)
A 		1.1
(-2.8)
A 		1.4
(-2)
A 		2.9
(1.6)
A 		1
(-3)
A 		3
B 1.3
(-2.3)
A 		1.3
(-2.3)
A 		0.9
(-2.7)
A 		0.6
(-3)
A 		1.1
(-2.5)
A 		6.7
(3)
A 		6
C 2.3
(3)
A 		1
(-2.2)
A 		1.2
(-1.4)
A 		0.8
(-3)
A 		2
(1.8)
A 		1
(-2.2)
A 		2
avr 2.4
(1.5) 		1.1
(-2.4) 		1.1
(-2.4) 		0.9
(-3) 		2
(0.3) 		2.9
(3) 		2
NetAffx Links Cluster Members
Consensus/Exemplar
GeneChip Array Information
Probe Set ID 183910_at
GeneChip Array C. elegans Genome Array
Organism Common Name Nematode
Probe Design Information
Transcript ID(Array Design) affy.Ce.7633
Sequence Type Exemplar sequence
Representative Public ID R13G10.4 NCBI
Target Description R13G10.4 /REP_DB=WormBase Gene ID /WP=CE03570 /TR=Q18498 /GB=CAA84672.1 /SUBMIT=HINXTON /CHR=3 /FEA=Sanger Annotation
Annotation Method Description
Annotation Description This probe set was annotated using the Matching Probes based pipeline to a RefSeq identifier using 1 transcript(s).
Annotation Grade This is a grade A annotation.
Annotation Transcript Cluster (# of Matching Probes) NM_065372(11)
Transcript Assignments
Representative
Transcript		 Description Matching Probes Related Probesets by Grade
NM_065372 NCBI Caenorhabditis elegans R13G10.4 (R13G10.4) mRNA, complete cds. 11/11 None
R13G10.4 ENSEMBL cdna:known chromosome:CEL140:III:3826356:3829183:-1 gene:R13G10.4 11/11 None
Annotation Notes
There are no noteworthy cross hybridizing mRNAs found for this probe set.
Genomic Alignment of Consensus/Exemplar Sequence
Assembly Wormbase March 2004
Alignment(s)
Position Identity Coverage Cytoband
chrIII:3826355-3829183(-) 98.85 100.0
Public Domain and Genome References
Gene Title
Ensembl R13G10.4
Entrez Gene 187872 Entrez gene
SwissProt Q18498 EMBL-EBI
WormBase CE03570 Wormbase
Functional Annotations
Protein Similarities
Method ID Description E-Value
blast CAA91278 Hypothetical protein R13G10.4 [Caenorhabditis elegans] emb|CAA84672.1| Hypothetical protein R13G10.4 [Caenorhabditis elegans] ref|NP_497773.1| R13G10.4 [Caenorhabditis elegans] 0.0
blast CAE63710 Hypothetical protein CBG08227 [Caenorhabditis briggsae] 1.0E-178
blast CAI16512 cyclin M2 [Homo sapiens] emb|CAI40077.1| cyclin M2 [Homo sapiens] 4.0E-21
Protein Domains
Database ID Description E-Value
Pfam IPR002550 EMBL-EBI CBS 3.1E-25
Pfam IPR000644 EMBL-EBI CBS domain 0.0018
Pfam IPR000644 EMBL-EBI CBS domain 2.6E-7
Trans Membrane
ID Number Of Domains Domain Boundaries
NP_497773.1 4 141-163,194-216,231-250,262-284
R13G10.4 4 141-163,194-216,231-250,262-284
Sequence
Target Sequence 
>C. ELEGANS:183910_AT
tgctctccgaatgccaagtgttgaaaagtctggacattggaataatgaaggccaagcaga
tcttatcgttggaccggattcgagttggaaagaaaaatgataagctggaactgcatgact
tgcttctggtgatcttcgagggaacggttttggttacgaatgaggtcgagacgtttgagc
gggtcattgatgtcccgtcgcaacggagctcatcaactgtcaatagtcaacaacacagac
aacagacaacagacaacagtcgtagcacaccagttcccgtgttgataattggaaagccgt
tgctcaataggctaatgaaaagcctcggaagcccgttcagtgagcctcttggaccaaagg
ataatgtcagcgagcttgtagttgtgtcggaggaagcttcgtattttaaactccgtctgg
aagacctaatgaactctatcaacggatgtcggaaggtcgacaggaatggccacacgacga
ccggcgaaagcttgctccaaaccttgaactcgcgtgcatcaacctcgaccagcacaactc
ctgcttgccgcaccccgctgtctgttgatgcaagatc

BLASTn GenBank NR
Probe Info
Probe Sequence(5'-3') Probe X Probe Y Probe Interrogation
Position 		Strandedness
TGCTCTCCGAATGCCAAGTGTTGAA 181 581 1565 Antisense
GCTGGAACTGCATGACTTGCTTCTG 262 295 1668 Antisense
CTTGCTTCTGGTGATCTTCGAGGGA 706 217 1683 Antisense
GAGCGGGTCATTGATGTCCCGTCGC 288 383 1741 Antisense
GACAACAGTCGTAGCACACCAGTTC 679 365 1816 Antisense
GTTCAGTGAGCCTCTTGGACCAAAG 358 445 1899 Antisense
AGCTTCGTATTTTAAACTCCGTCTG 335 79 1959 Antisense
GAAGGTCGACAGGAATGGCCACACG 214 335 2016 Antisense
ACACGACGACCGGCGAAAGCTTGCT 635 105 2036 Antisense
AAAGCTTGCTCCAAACCTTGAACTC 538 123 2051 Antisense
CCCCGCTGTCTGTTGATGCAAGATC 88 259 2117 Antisense
Sequence Source Affymetrix Proprietary Database