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[183908_at]

Description F09F7.5 /REP_DB=WormBase Gene ID /WP=CE01237 /TR=Q19275 /GB=AAA50697.1 /SUBMIT=ST.LOUIS /CHR=3 /FEA=Sanger Annotation
Cluster 6grp_highest_10_10 > 41      6grp_high1_10_10 > 14      4grp_highest_8_8 > 55      4grp_high_8_8 > 19      6grp_highest_nonorm > 80      6grp_total > 15      4grp_total > 29      6grp_highest_sub > De      6grp_total_sub > Decrease      6grp_rule_based > S1      

Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 203
1 2 3 4 range
A 279.5
(0.6)
P 		267.2
(-0)
P 		204.4
(-3)
P 		331.1
(3)
P 		127
B 263.6
(-2.3)
P 		253.8
(-3)
P 		253.3
(-3)
P 		344.1
(3)
P 		91
C 407.3
(3)
P 		294.6
(-1)
P 		237.8
(-3)
P 		295.8
(-0.9)
P 		170
avr 316.8
(2.5) 		271.9
(-0.4) 		231.8
(-3) 		323.7
(3) 		92

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 160
1 2 3 4 5 6 range
A 328.7
(3)
P 		322.1
(2.7)
P 		182.3
(-3)
P 		242
(-0.6)
P 		182.8
(-3)
P 		186.2
(-2.8)
P 		146
B 264
(3)
P 		248.3
(2)
P 		258.2
(2.6)
P 		227.6
(0.6)
P 		171.2
(-3)
P 		184.3
(-2.2)
P 		93
C 268.9
(2.6)
P 		275.2
(3)
P 		213.3
(-0.5)
P 		187
(-2)
P 		253
(1.8)
P 		168.3
(-3)
P 		107
avr 287.2
(3) 		281.9
(2.7) 		217.9
(-0.9) 		218.9
(-0.8) 		202.3
(-1.7) 		179.6
(-3) 		108
No Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 86
1 2 3 4 range
A 101.8
(3)
P 		58
(-1.9)
P 		53.4
(-2.4)
P 		48.5
(-3)
P 		53
B 84.1
(3)
P 		62.7
(-2.1)
P 		58.7
(-3)
P 		73.3
(0.4)
P 		25
C 134.8
(3)
P 		84.7
(-0.5)
P 		82.9
(-0.7)
P 		49.9
(-3)
P 		85
avr 106.9
(3) 		68.5
(-1.6) 		65
(-2.1) 		57.2
(-3) 		50

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 77
1 2 3 4 5 6 range
A 60.6
(-1.3)
P 		114.6
(3)
P 		39.7
(-3)
P 		61.4
(-1.3)
P 		55.2
(-1.8)
P 		45.3
(-2.6)
P 		75
B 91.9
(3)
P 		82.6
(1.2)
P 		62.7
(-2.5)
P 		60.3
(-3)
P 		69.6
(-1.2)
P 		68.7
(-1.4)
P 		32
C 99.7
(3)
P 		84
(1.5)
P 		54.3
(-1.4)
P 		37.6
(-3)
P 		81.9
(1.3)
P 		56.3
(-1.2)
P 		62
avr 84.1
(1.6) 		93.7
(3) 		52.2
(-3) 		53.1
(-2.9) 		68.9
(-0.6) 		56.8
(-2.3) 		42
NetAffx Links Cluster Members
Consensus/Exemplar
GeneChip Array Information
Probe Set ID 183908_at
GeneChip Array C. elegans Genome Array
Organism Common Name Nematode
Probe Design Information
Transcript ID(Array Design) affy.Ce.7611
Sequence Type Exemplar sequence
Representative Public ID F09F7.5 NCBI
Target Description F09F7.5 /REP_DB=WormBase Gene ID /WP=CE01237 /TR=Q19275 /GB=AAA50697.1 /SUBMIT=ST.LOUIS /CHR=3 /FEA=Sanger Annotation
Annotation Method Description
Annotation Description This probe set was annotated using the Matching Probes based pipeline to a RefSeq identifier using 1 transcript(s).
Annotation Grade This is a grade A annotation.
Annotation Transcript Cluster (# of Matching Probes) NM_065786(11), NM_065785(11), NM_065787(11)
Transcript Assignments
Representative
Transcript		 Description Matching Probes Related Probesets by Grade
NM_065786 NCBI Caenorhabditis elegans F09F7.5b (F09F7.5) mRNA, complete cds. 11/11 None
NM_065785 NCBI Caenorhabditis elegans F09F7.5a (F09F7.5) mRNA, complete cds. 11/11 None
NM_065787 NCBI Caenorhabditis elegans F09F7.5c (F09F7.5) mRNA, complete cds. 11/11 None
GENEFINDER00000025406 ENSEMBL cdna:GeneFinder chromosome:CEL140:III:5547086:5551067:1 11/11 None
SNAP00000025395 ENSEMBL cdna:SNAP chromosome:CEL140:III:5548149:5551067:1 11/11 None
F09F7.5c ENSEMBL cdna:known chromosome:CEL140:III:5547064:5551106:1 gene:F09F7.5 11/11 None
F09F7.5b ENSEMBL cdna:known chromosome:CEL140:III:5547066:5551197:1 gene:F09F7.5 11/11 None
F09F7.5a ENSEMBL cdna:known chromosome:CEL140:III:5547086:5551067:1 gene:F09F7.5 11/11 None
Annotation Notes
There are no noteworthy cross hybridizing mRNAs found for this probe set.
Genomic Alignment of Consensus/Exemplar Sequence
Assembly Wormbase March 2004
Alignment(s)
Position Identity Coverage Cytoband
chrIII:5547084-5551066(+) 100.0 100.0
Public Domain and Genome References
Ensembl F09F7.5
Functional Annotations
Protein Similarities
Method ID Description E-Value
blast NP_498187 F09F7.5b [Caenorhabditis elegans] gb|AAL02479.1| Hypothetical protein F09F7.5b [Caenorhabditis elegans] 0.0
blast NP_498186 F09F7.5a [Caenorhabditis elegans] gb|AAA50697.1| Hypothetical protein F09F7.5a [Caenorhabditis elegans] 0.0
blast NP_498188 F09F7.5c [Caenorhabditis elegans] gb|AAL02480.1| Hypothetical protein F09F7.5c [Caenorhabditis elegans] 0.0
Protein Domains
Database ID Description E-Value
Pfam IPR000095 EMBL-EBI PAK-box/P21-Rho-binding 4.9E-7
Pfam IPR000095 EMBL-EBI PAK-box/P21-Rho-binding 1.5E-7
Sequence
Target Sequence 
>C. ELEGANS:183908_AT
ctccctcatatgaagctccaagctttgatgctcccgaagctcctggtacagtattaatca
atggaagagccttgacaaagcaaaatgcgctagacctccgctcaagtgacgaaagtggag
tacctcctgcaattgccaggttcttatatgataagaggatcaagtcagcaacaatgccaa
tgtccatcggaagaatgacgtcttcatctgggaacacggatgtttccactacctcgtcaa
gatcaaatgcagatactgtgtcaagtattctgtcgacggttg

BLASTn GenBank NR
Probe Info
Probe Sequence(5'-3') Probe X Probe Y Probe Interrogation
Position 		Strandedness
CTCCCTCATATGAAGCTCCAAGCTT 611 233 1136 Antisense
TCCAAGCTTTGATGCTCCCGAAGCT 424 585 1152 Antisense
TCCCGAAGCTCCTGGTACAGTATTA 229 595 1167 Antisense
AAGCAAAATGCGCTAGACCTCCGCT 367 151 1213 Antisense
AGACCTCCGCTCAAGTGACGAAAGT 160 69 1227 Antisense
GTACCTCCTGCAATTGCCAGGTTCT 76 459 1255 Antisense
GCAACAATGCCAATGTCCATCGGAA 245 319 1303 Antisense
ATGACGTCTTCATCTGGGAACACGG 274 43 1330 Antisense
GGGAACACGGATGTTTCCACTACCT 670 493 1345 Antisense
TTTCCACTACCTCGTCAAGATCAAA 218 661 1358 Antisense
GTGTCAAGTATTCTGTCGACGGTTG 646 485 1393 Antisense
Sequence Source Affymetrix Proprietary Database