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[183907_at]

Description ZK1025.7 /REP_DB=WormBase Gene ID /WP=CE19334 /TR=Q9XXM0 /GB=CAA18365.1 /SUBMIT=HINXTON /CHR=1 /FEA=Sanger Annotation
Cluster 6grp_total > 11      4grp_total > 57      6grp_total_sub > Hat      6grp_rule_based > S2      4grp_rule_based > L3      

Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 990
1 2 3 4 range
A 2.5
(-3)
A 		801.8
(1.8)
P 		992.1
(3)
P 		6.9
(-3)
A 		990
B 2.5
(-3)
A 		695.3
(1.5)
P 		923
(3)
P 		2.3
(-3)
A 		921
C 2.9
(-3)
A 		655.8
(1.4)
P 		883.9
(3)
P 		32.7
(-2.8)
A 		881
avr 2.6
(-3) 		717.6
(1.6) 		933
(3) 		14
(-2.9) 		930

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 129
1 2 3 4 5 6 range
A 41.9
(-1.1)
A 		127.5
(3)
P 		58.3
(-0.3)
A 		3.4
(-3)
A 		3.8
(-3)
A 		6.5
(-2.9)
A 		124
B 20.2
(-2.1)
A 		129.8
(3)
P 		61.2
(-0.2)
A 		4.5
(-2.8)
A 		2.8
(-2.9)
A 		1
(-3)
A 		129
C 68.6
(0.9)
A 		104.6
(3)
P 		66.2
(0.7)
A 		17.1
(-2.1)
A 		2.3
(-3)
A 		5.9
(-2.8)
A 		102
avr 43.6
(-0.9) 		120.6
(3) 		61.9
(0) 		8.3
(-2.7) 		3
(-3) 		4.5
(-2.9) 		118
No Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 308
1 2 3 4 range
A 0.9
(-3)
A 		174.1
(1)
P 		259.4
(3)
P 		1
(-3)
A 		259
B 0.8
(-3)
A 		171.7
(1.8)
P 		213.9
(3)
P 		0.5
(-3)
A 		213
C 0.9
(-3)
A 		188.6
(0.7)
P 		308.1
(3)
P 		5.5
(-2.9)
A 		307
avr 0.9
(-3) 		178.1
(1.1) 		260.5
(3) 		2.3
(-3) 		260

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 45
1 2 3 4 5 6 range
A 7.7
(-2.1)
A 		45.4
(3)
P 		12.7
(-1.4)
A 		0.9
(-3)
A 		1.1
(-3)
A 		1.6
(-2.9)
A 		45
B 7
(-2.1)
A 		43.2
(3)
P 		14.9
(-1)
A 		1.2
(-2.9)
A 		1.1
(-2.9)
A 		0.4
(-3)
A 		43
C 25.4
(1.7)
A 		31.9
(3)
P 		16.9
(0.1)
A 		3.4
(-2.5)
A 		0.8
(-3)
A 		2
(-2.8)
A 		31
avr 13.4
(-1.1) 		40.2
(3) 		14.8
(-0.9) 		1.8
(-2.9) 		1
(-3) 		1.3
(-3) 		39
NetAffx Links Cluster Members
Consensus/Exemplar
GeneChip Array Information
Probe Set ID 183907_at
GeneChip Array C. elegans Genome Array
Organism Common Name Nematode
Probe Design Information
Transcript ID(Array Design) affy.Ce.1486
Sequence Type Exemplar sequence
Representative Public ID ZK1025.7 NCBI
Target Description ZK1025.7 /REP_DB=WormBase Gene ID /WP=CE19334 /TR=Q9XXM0 /GB=CAA18365.1 /SUBMIT=HINXTON /CHR=1 /FEA=Sanger Annotation
Annotation Method Description
Annotation Description This probe set was annotated using the Matching Probes based pipeline to a RefSeq identifier using 1 transcript(s).
Annotation Grade This is a grade A annotation.
Annotation Transcript Cluster (# of Matching Probes) NM_060528(11)
Transcript Assignments
Representative
Transcript		 Description Matching Probes Related Probesets by Grade
NM_060528 NCBI Caenorhabditis elegans ZK1025.7 (ZK1025.7) mRNA, complete cds. 11/11 A 
SNAP00000038820 ENSEMBL cdna:SNAP chromosome:CEL140:I:11467205:11475656:1 11/11 None
GENEFINDER00000038826 ENSEMBL cdna:GeneFinder chromosome:CEL140:I:11473295:11475656:1 11/11 None
ZK1025.7 ENSEMBL cdna:known chromosome:CEL140:I:11473264:11475714:1 gene:ZK1025.7 11/11 A 
Annotation Notes
Cross Hybridizing mRNA Matched Probes Nature of Assignment Related Probesets by Grade
SNAP00000038817 3/11 Cross Hyb Matching Probes None
Genomic Alignment of Consensus/Exemplar Sequence
Assembly Wormbase March 2004
Alignment(s)
Position Identity Coverage Cytoband
chrI:11473225-11475587(+) 100.0 100.0
Public Domain and Genome References
Gene Title
Ensembl ZK1025.7
Entrez Gene 173031 Entrez gene
WormBase CE19334 Wormbase
Functional Annotations
Protein Similarities
Method ID Description E-Value
blast CAA18365 Hypothetical protein ZK1025.7 [Caenorhabditis elegans] ref|NP_492929.1| ZK1025.7 [Caenorhabditis elegans] 0.0
blast CAA18367 Hypothetical protein ZK1025.4 [Caenorhabditis elegans] ref|NP_492927.2| ZK1025.4 [Caenorhabditis elegans] 1.0E-160
blast CAA18367 Hypothetical protein ZK1025.4 [Caenorhabditis elegans] ref|NP_492927.2| ZK1025.4 [Caenorhabditis elegans] 1.0E-148
blast CAB05625 Hypothetical protein T15D6.12 [Caenorhabditis elegans] ref|NP_493143.1| T15D6.12 [Caenorhabditis elegans] 1.0E-126
Protein Domains
Database ID Description E-Value
Pfam IPR008166 EMBL-EBI Protein of unknown function DUF23 1.0E-126
Pfam IPR008166 EMBL-EBI Protein of unknown function DUF23 3.0E-121
Trans Membrane
ID Number Of Domains Domain Boundaries
NP_492929.1 1 9-31
ZK1025.7 1 9-31
GENEFINDER00000038826 1 9-31
Sequence
Target Sequence 
>C. ELEGANS:183907_AT
gacgtctttgggtattgttgcggatttcgatgaggttatggtacccgataagggtactgt
acttgatcatgcgatgaaggaaatgaccgggaaggatattggagcattgttgtttgaaaa
tacacatgttgcactgacgcctaatatttatacgaataactactcaggagtgaggtcact
gacgttcaccgatattttcgcaccgcccaagtacatcttcaacacctctcttattgatat
ctgtgaaacccattccccaggaaagttccttcataagtccaccta

BLASTn GenBank NR
Probe Info
Probe Sequence(5'-3') Probe X Probe Y Probe Interrogation
Position 		Strandedness
GACGTCTTTGGGTATTGTTGCGGAT 8 379 780 Antisense
GTTGCGGATTTCGATGAGGTTATGG 73 441 796 Antisense
GTACTGTACTTGATCATGCGATGAA 399 459 833 Antisense
GACCGGGAAGGATATTGGAGCATTG 296 383 864 Antisense
AATACACATGTTGCACTGACGCCTA 469 169 898 Antisense
GCACTGACGCCTAATATTTATACGA 322 315 910 Antisense
GAGTGAGGTCACTGACGTTCACCGA 209 397 947 Antisense
TGACGTTCACCGATATTTTCGCACC 250 571 959 Antisense
CATCTTCAACACCTCTCTTATTGAT 396 213 993 Antisense
TGATATCTGTGAAACCCATTCCCCA 366 565 1014 Antisense
GAAAGTTCCTTCATAAGTCCACCTA 167 361 1040 Antisense
Sequence Source Affymetrix Proprietary Database