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[183906_at]

Description F56D2.2 /REP_DB=WormBase Gene ID /WP=CE11228 /TR=Q20874 /GB=AAB52681.1 /SUBMIT=ST.LOUIS /CHR=3 /FEA=Sanger Annotation
Cluster 6grp_highest_10_10 > 69      6grp_high1_10_10 > 96      4grp_highest_8_8 > 21      4grp_high_8_8 > 15      6grp_highest_nonorm > 92      6grp_total > 86      4grp_total > 0      6grp_highest_sub > In      6grp_high1_sub > In      6grp_total_sub > Increase      6grp_rule_based > S6      4grp_rule_based > L4      

Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 151
1 2 3 4 range
A 141
(-1.1)
P 		92.2
(-3)
P 		145.1
(-0.9)
P 		243
(3)
P 		151
B 131.3
(-2.9)
P 		129.6
(-3)
P 		133
(-2.8)
P 		235.9
(3)
P 		106
C 100.9
(-3)
P 		120.8
(-2)
P 		174.3
(0.8)
P 		217.8
(3)
P 		117
avr 124.4
(-2.5) 		114.2
(-3) 		150.8
(-1.1) 		232.2
(3) 		118

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 622
1 2 3 4 5 6 range
A 158.8
(-3)
P 		208.4
(-2.2)
P 		228.4
(-1.8)
P 		281.5
(-0.9)
P 		425.9
(1.5)
P 		516.3
(3)
P 		358
B 133.8
(-3)
P 		183.4
(-2.5)
P 		283.1
(-1.5)
P 		347.5
(-0.8)
P 		461.2
(0.3)
P 		720.5
(3)
P 		587
C 98.2
(-3)
P 		171.8
(-2.2)
P 		200.9
(-1.9)
P 		395.7
(0.2)
P 		377.4
(0)
P 		651.7
(3)
P 		554
avr 130.3
(-3) 		187.9
(-2.3) 		237.5
(-1.7) 		341.6
(-0.5) 		421.5
(0.5) 		629.5
(3) 		499
No Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 41
1 2 3 4 range
A 51.4
(3)
P 		20
(-3)
P 		37.9
(0.4)
P 		35.6
(-0)
P 		31
B 41.9
(0.4)
P 		32
(-2.6)
P 		30.8
(-3)
P 		50.3
(3)
P 		20
C 33.4
(-3)
P 		34.7
(-2.7)
P 		60.8
(3)
P 		36.7
(-2.3)
P 		27
avr 42.2
(2.6) 		28.9
(-3) 		43.2
(3) 		40.9
(2) 		14

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 239
1 2 3 4 5 6 range
A 29.3
(-3)
P 		74.1
(-0.3)
P 		49.7
(-1.8)
P 		71.4
(-0.5)
P 		128.5
(3)
P 		125.7
(2.8)
P 		99
B 46.6
(-3)
P 		61
(-2.6)
P 		68.8
(-2.4)
P 		92
(-1.8)
P 		187.4
(0.8)
P 		268.7
(3)
P 		222
C 36.4
(-3)
P 		52.4
(-2.5)
P 		51.1
(-2.5)
P 		79.6
(-1.6)
P 		122.1
(-0.2)
P 		218.2
(3)
P 		182
avr 37.4
(-3) 		62.5
(-2.1) 		56.5
(-2.3) 		81
(-1.4) 		146
(0.9) 		204.2
(3) 		167
NetAffx Links Cluster Members
Consensus/Exemplar
GeneChip Array Information
Probe Set ID 183906_at
GeneChip Array C. elegans Genome Array
Organism Common Name Nematode
Probe Design Information
Transcript ID(Array Design) affy.Ce.7613
Sequence Type Exemplar sequence
Representative Public ID F56D2.2 NCBI
Target Description F56D2.2 /REP_DB=WormBase Gene ID /WP=CE11228 /TR=Q20874 /GB=AAB52681.1 /SUBMIT=ST.LOUIS /CHR=3 /FEA=Sanger Annotation
Annotation Method Description
Annotation Description This probe set was annotated using the Matching Probes based pipeline to a RefSeq identifier using 1 transcript(s).
Annotation Grade This is a grade A annotation.
Annotation Transcript Cluster (# of Matching Probes) NM_065799(11)
Transcript Assignments
Representative
Transcript		 Description Matching Probes Related Probesets by Grade
NM_065799 NCBI Caenorhabditis elegans F56D2.2 (F56D2.2) mRNA, complete cds. 11/11 None
SNAP00000013289 ENSEMBL cdna:SNAP chromosome:CEL140:III:5587216:5589014:1 11/11 None
GENEFINDER00000013299 ENSEMBL cdna:GeneFinder chromosome:CEL140:III:5587216:5589014:1 11/11 None
F56D2.2.2 ENSEMBL cdna:known chromosome:CEL140:III:5587183:5589022:1 gene:F56D2.2 11/11 None
F56D2.2.1 ENSEMBL cdna:known chromosome:CEL140:III:5587216:5589048:1 gene:F56D2.2 11/11 None
Annotation Notes
There are no noteworthy cross hybridizing mRNAs found for this probe set.
Genomic Alignment of Consensus/Exemplar Sequence
Assembly Wormbase March 2004
Alignment(s)
Position Identity Coverage Cytoband
chrIII:5587214-5589013(+) 100.0 100.0
Public Domain and Genome References
Gene Title
Ensembl F56D2.2
Entrez Gene 175770 Entrez gene
SwissProt Q20874 EMBL-EBI
WormBase CE11228 Wormbase
Functional Annotations
Protein Similarities
Method ID Description E-Value
blast AAB52681 Hypothetical protein F56D2.2 [Caenorhabditis elegans] ref|NP_498200.1| F56D2.2 [Caenorhabditis elegans] 0.0
blast CAE64302 Hypothetical protein CBG08978 [Caenorhabditis briggsae] 0.0
blast AAB52683 Hypothetical protein F56D2.5 [Caenorhabditis elegans] ref|NP_498196.1| F56D2.5 [Caenorhabditis elegans] 0.0
Protein Domains
Database ID Description E-Value
Pfam IPR002867 EMBL-EBI Zn-finger, cysteine-rich C6HC 3.6E-17
Pfam IPR006575 EMBL-EBI RWD 4.5E-22
Pfam IPR002867 EMBL-EBI Zn-finger, cysteine-rich C6HC 1.0E-23
Sequence
Target Sequence 
>C. ELEGANS:183906_AT
atatgcaaaacaacgcttcctggccgaatgctcctactgtaacttttcgttctgcaatct
gtgtaagcagacattccacggaatagaacgctgcaaatggaagaaaggagacaaagagct
tcttgtcaaaagatggaaggatggagatgaagctgagaaggctgaaatgtgcaggcaatt
tggaggagagaagcgtgtcgaggagcttgtggagcggttcctcaatgaggaatggctgga
ttcgaacagcaaaccgtgtcccaagtgctcggtgagcatagagaagaatgaaggatgcca
caagatgcactgtacgaagtgtgacacctacttctgttggttgtgctctgaaactcttga
caaggaagatccttataagcattttcagggagatggatcatgctctggacgtctgttcga
aggagttcatcacgatttgctagataacgatgacgatcttcttttcgatatggcatttaa
cgacggtagtgactatgacagtgatgagaccgtcgagtatcctgaatcc

BLASTn GenBank NR
Probe Info
Probe Sequence(5'-3') Probe X Probe Y Probe Interrogation
Position 		Strandedness
ATATGCAAAACAACGCTTCCTGGCC 250 21 771 Antisense
GAATGCTCCTACTGTAACTTTTCGT 662 329 796 Antisense
TAACTTTTCGTTCTGCAATCTGTGT 586 637 810 Antisense
GCTTGTGGAGCGGTTCCTCAATGAG 377 305 975 Antisense
AACAGCAAACCGTGTCCCAAGTGCT 404 133 1015 Antisense
GATGCCACAAGATGCACTGTACGAA 293 415 1064 Antisense
GTGACACCTACTTCTGTTGGTTGTG 133 483 1091 Antisense
GTTGGTTGTGCTCTGAAACTCTTGA 539 435 1106 Antisense
CATGCTCTGGACGTCTGTTCGAAGG 495 209 1169 Antisense
GACGATCTTCTTTTCGATATGGCAT 329 379 1222 Antisense
TGAGACCGTCGAGTATCCTGAATCC 96 569 1275 Antisense
Sequence Source Affymetrix Proprietary Database