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[183905_at]

Description Y51A2A.1 /REP_DB=WormBase Gene ID /WP=CE20273 /TR=Q9XWQ0 /GB=CAA21600.1 /SUBMIT=HINXTON /CHR=5 /FEA=Sanger Annotation
Cluster 6grp_total > 53      4grp_total > 09      6grp_total_sub > Hat      6grp_rule_based > S3      4grp_rule_based > L4      

Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 31
1 2 3 4 range
A 4.7
(-2.6)
A 		8.2
(-1.9)
A 		2.9
(-3)
A 		32.9
(3)
A 		30
B 1.6
(-3)
A 		4.8
(-1.5)
A 		4.6
(-1.6)
A 		14.7
(3)
A 		13
C 1.5
(-3)
A 		4.6
(-2)
A 		11.2
(0.2)
A 		19.5
(3)
A 		18
avr 2.6
(-3) 		5.9
(-2) 		6.2
(-1.9) 		22.4
(3) 		20

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 25
1 2 3 4 5 6 range
A 7.5
(-1.9)
A 		26
(3)
A 		12.3
(-0.6)
A 		3.3
(-3)
A 		9.7
(-1.3)
A 		6.2
(-2.2)
A 		23
B 3.5
(-2.7)
A 		5.7
(-2.2)
A 		27.5
(3)
A 		4.2
(-2.5)
A 		2.5
(-3)
A 		2.3
(-3)
A 		25
C 4.1
(-3)
A 		5.6
(-2.5)
A 		23.8
(3)
A 		4.1
(-3)
A 		5
(-2.7)
A 		4.3
(-2.9)
A 		20
avr 5
(-2.6) 		12.4
(-0.1) 		21.2
(3) 		3.9
(-3) 		5.7
(-2.4) 		4.3
(-2.9) 		17
No Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 4
1 2 3 4 range
A 1.7
(-1.7)
A 		1.8
(-1.5)
A 		0.8
(-3)
A 		4.8
(3)
A 		4
B 0.5
(-3)
A 		1.2
(-1.4)
A 		1.1
(-1.6)
A 		3.1
(3)
A 		3
C 0.5
(-3)
A 		1.3
(-1.6)
A 		3.9
(3)
A 		3.3
(1.9)
A 		3
avr 0.9
(-3) 		1.4
(-1.9) 		1.9
(-0.9) 		3.7
(3) 		3

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 9
1 2 3 4 5 6 range
A 1.4
(-2.6)
A 		9.3
(3)
A 		2.7
(-1.7)
A 		0.8
(-3)
A 		2.9
(-1.5)
A 		1.5
(-2.5)
A 		9
B 1.2
(-2.7)
A 		1.9
(-2)
A 		6.7
(3)
A 		1.1
(-2.8)
A 		1
(-2.9)
A 		0.9
(-3)
A 		6
C 1.5
(-2.2)
A 		1.7
(-2)
A 		6.1
(3)
A 		0.8
(-3)
A 		1.6
(-2.1)
A 		1.4
(-2.3)
A 		5
avr 1.4
(-2.3) 		4.3
(1.7) 		5.2
(3) 		0.9
(-3) 		1.8
(-1.7) 		1.3
(-2.4) 		4
NetAffx Links Cluster Members
Consensus/Exemplar
GeneChip Array Information
Probe Set ID 183905_at
GeneChip Array C. elegans Genome Array
Organism Common Name Nematode
Probe Design Information
Transcript ID(Array Design) affy.Ce.13454
Sequence Type Exemplar sequence
Representative Public ID Y51A2A.1 NCBI
Target Description Y51A2A.1 /REP_DB=WormBase Gene ID /WP=CE20273 /TR=Q9XWQ0 /GB=CAA21600.1 /SUBMIT=HINXTON /CHR=5 /FEA=Sanger Annotation
Annotation Method Description
Annotation Description This probe set was annotated using the Matching Probes based pipeline to a RefSeq identifier using 1 transcript(s).
Annotation Grade This is a grade A annotation.
Annotation Transcript Cluster (# of Matching Probes) NM_075176(11)
Transcript Assignments
Representative
Transcript		 Description Matching Probes Related Probesets by Grade
NM_075176 NCBI Caenorhabditis elegans Y51A2A.1 (Y51A2A.1) mRNA, complete cds. 11/11 None
GENEFINDER00000039485 ENSEMBL cdna:GeneFinder chromosome:CEL140:V:18285440:18289094:1 11/11 None
Y51A2A.1 ENSEMBL cdna:known chromosome:CEL140:V:18285440:18289168:1 gene:Y51A2A.1 11/11 None
Annotation Notes
Cross Hybridizing mRNA Matched Probes Nature of Assignment Related Probesets by Grade
SNAP00000039465 5/11 Cross Hyb Matching Probes None
Genomic Alignment of Consensus/Exemplar Sequence
Assembly Wormbase March 2004
Alignment(s)
Position Identity Coverage Cytoband
chrV:18285439-18289168(+) 100.0 100.0
Public Domain and Genome References
Gene Title
Ensembl Y51A2A.1
Entrez Gene 190117 Entrez gene
SwissProt Q9XWQ0 EMBL-EBI
WormBase CE20273 Wormbase
Functional Annotations
Protein Similarities
Method ID Description E-Value
blast CAA21600 Hypothetical protein Y51A2A.1 [Caenorhabditis elegans] ref|NP_507577.1| Y51A2A.1 [Caenorhabditis elegans] 0.0
blast CAA21600 Hypothetical protein Y51A2A.1 [Caenorhabditis elegans] ref|NP_507577.1| Y51A2A.1 [Caenorhabditis elegans] 1.0E-172
blast CAB04438 Hypothetical protein F49H6.2 [Caenorhabditis elegans] ref|NP_507306.1| F49H6.2 [Caenorhabditis elegans] 5.0E-28
blast CAB03933 Hypothetical protein C31G12.2 [Caenorhabditis elegans] ref|NP_507555.1| C31G12.2 [Caenorhabditis elegans] 5.0E-25
Sequence
Target Sequence 
>C. ELEGANS:183905_AT
ggtcttgaaccttctaaactggcaaattctatatagctcatggacaccatcgctatggag
cagcgagtatattatgattttagactcgtatagtgcatttggtgaaccgtttgatgcaat
ctggattggagctcaaagaacaactgcatgtttggcttcagtgcaaaccgcgacatgtac
taaagataattcttttgaatggacagacatgtcaacgaccggcattgacggatttctatg
gagtggtgcagacccgaacaacggagggcctgctctcaaaaacgacaaaaaaagtacgaa
aaatgtcatttacaacggtaaaaaatttttaaaaaaagcgataaaagtcagcaagcgcgc
tcctataattatgaacacgccagaagactgtgcgtcaatgaacactgcgtcatcgcgttc
gtggatggtcccagactggctgata

BLASTn GenBank NR
Probe Info
Probe Sequence(5'-3') Probe X Probe Y Probe Interrogation
Position 		Strandedness
GGTCTTGAACCTTCTAAACTGGCAA 194 503 567 Antisense
TAGCTCATGGACACCATCGCTATGG 245 651 600 Antisense
ACAACTGCATGTTTGGCTTCAGTGC 475 113 706 Antisense
GCTTCAGTGCAAACCGCGACATGTA 254 305 721 Antisense
GACAGACATGTCAACGACCGGCATT 293 367 768 Antisense
GACCGGCATTGACGGATTTCTATGG 345 383 783 Antisense
AGACCCGAACAACGGAGGGCCTGCT 85 69 816 Antisense
TAAAAGTCAGCAAGCGCGCTCCTAT 140 641 908 Antisense
GTGCGTCAATGAACACTGCGTCATC 163 479 956 Antisense
TGCGTCATCGCGTTCGTGGATGGTC 379 583 972 Antisense
GTGGATGGTCCCAGACTGGCTGATA 78 491 987 Antisense
Sequence Source Affymetrix Proprietary Database