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[183904_at]

Description T12A2.3 /REP_DB=WormBase Gene ID /WP=CE01396 /TR=Q22415 /GB=AAC24443.1 /SUBMIT=ST.LOUIS /CHR=3 /FEA=Sanger Annotation
Cluster 6grp_total > 67      4grp_total > 03      6grp_total_sub > Increase      6grp_rule_based > S6      4grp_rule_based > L4      

Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 8
1 2 3 4 range
A 6.2
(-2.1)
A 		6
(-2.4)
A 		5.5
(-3)
A 		10.2
(3)
A 		5
B 2.3
(-3)
A 		3.3
(-1.6)
A 		3.2
(-1.7)
A 		6.6
(3)
A 		4
C 4.7
(-0.6)
A 		3.1
(-2.2)
A 		2.3
(-3)
A 		8.4
(3)
A 		6
avr 4.4
(-2.1) 		4.1
(-2.5) 		3.7
(-3) 		8.4
(3) 		5

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 54
1 2 3 4 5 6 range
A 10
(3)
A 		3
(-3)
A 		3.3
(-2.7)
A 		4
(-2.1)
A 		4.6
(-1.6)
A 		7.2
(0.6)
A 		7
B 3.1
(-2.9)
A 		2.9
(-2.9)
A 		2.3
(-3)
A 		3.7
(-2.8)
A 		2.9
(-2.9)
A 		56.5
(3)
A 		54
C 2.3
(-3)
A 		2.5
(-3)
A 		2.4
(-3)
A 		3.4
(-2.8)
A 		4.3
(-2.6)
A 		31.8
(3)
A 		30
avr 5.1
(-2.5) 		2.8
(-3) 		2.7
(-3) 		3.7
(-2.8) 		3.9
(-2.8) 		31.8
(3) 		29
No Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 2
1 2 3 4 range
A 2.3
(3)
A 		1.3
(-3)
A 		1.4
(-2.4)
A 		1.5
(-1.8)
A 		1
B 0.7
(-3)
A 		0.8
(-2.1)
A 		0.7
(-3)
A 		1.4
(3)
A 		1
C 1.6
(3)
A 		0.9
(-2.3)
A 		0.8
(-3)
A 		1.4
(1.5)
A 		1
avr 1.5
(3) 		1
(-3) 		1
(-3) 		1.4
(1.8) 		1

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 21
1 2 3 4 5 6 range
A 1.8
(3)
A 		1.1
(-0.8)
A 		0.7
(-3)
A 		1
(-1.4)
A 		1.4
(0.8)
A 		1.8
(3)
A 		1
B 1.1
(-2.9)
A 		1
(-2.9)
A 		0.6
(-3)
A 		1
(-2.9)
A 		1.2
(-2.8)
A 		21.1
(3)
A 		21
C 0.8
(-2.9)
A 		0.8
(-2.9)
A 		0.6
(-3)
A 		0.7
(-2.9)
A 		1.4
(-2.5)
A 		10.7
(3)
A 		10
avr 1.2
(-2.7) 		1
(-2.8) 		0.6
(-3) 		0.9
(-2.8) 		1.3
(-2.6) 		11.2
(3) 		11
NetAffx Links Cluster Members
Consensus/Exemplar
GeneChip Array Information
Probe Set ID 183904_at
GeneChip Array C. elegans Genome Array
Organism Common Name Nematode
Probe Design Information
Transcript ID(Array Design) affy.Ce.7614
Sequence Type Exemplar sequence
Representative Public ID T12A2.3 NCBI
Target Description T12A2.3 /REP_DB=WormBase Gene ID /WP=CE01396 /TR=Q22415 /GB=AAC24443.1 /SUBMIT=ST.LOUIS /CHR=3 /FEA=Sanger Annotation
Annotation Method Description
Annotation Description This probe set was annotated using the Matching Probes based pipeline to a RefSeq identifier using 1 transcript(s).
Annotation Grade This is a grade A annotation.
Annotation Transcript Cluster (# of Matching Probes) NM_065957(11)
Transcript Assignments
Representative
Transcript		 Description Matching Probes Related Probesets by Grade
NM_065957 NCBI Caenorhabditis elegans T12A2.3 (T12A2.3) mRNA, complete cds. 11/11 None
SNAP00000026123 ENSEMBL cdna:SNAP chromosome:CEL140:III:6240767:6241387:1 11/11 None
GENEFINDER00000026148 ENSEMBL cdna:GeneFinder chromosome:CEL140:III:6240767:6241387:1 11/11 None
T12A2.3 ENSEMBL cdna:known chromosome:CEL140:III:6240767:6241519:1 gene:T12A2.3 11/11 None
Annotation Notes
There are no noteworthy cross hybridizing mRNAs found for this probe set.
Genomic Alignment of Consensus/Exemplar Sequence
Assembly Wormbase March 2004
Alignment(s)
Position Identity Coverage Cytoband
chrIII:6240765-6241386(+) 100.0 100.0
Public Domain and Genome References
Gene Title
Ensembl T12A2.3
Entrez Gene 175884 Entrez gene
SwissProt Q22415 EMBL-EBI
WormBase CE01396 Wormbase
Functional Annotations
Protein Similarities
Method ID Description E-Value
blast AAC24443 Hypothetical protein T12A2.3 [Caenorhabditis elegans] ref|NP_498358.1| T12A2.3 [Caenorhabditis elegans] 4.0E-94
Sequence
Target Sequence 
>C. ELEGANS:183904_AT
tcaccccggagctcaatatggcagtctgcgaattcaatttggattcaggatgcaatgcca
aagaatcgctcattgaaatggcgaacaacaagatctcattggaaactttcaaagagcaca
atatcaaggcactcaccatgaaatatgtcaactcagagagtatgatgtgggaagcaagaa
aaattgttagaattatttctcgccttgaagcggatgaacatcagtccagagttgctccaa
aaaggtcaagaagtcctggatctacatccccatctgcatcgaactcttcatcttcttcaa
gtgaactctcatttgatatgttctcgtctaaaagaaccgtcccaatgaaagtcacttcaa
agccaaaaagagtgattgctcaagcttcacggaccatgaagccacatcagcaagagtctc
gtcaagaatccgctgaaaaagatcgagccaatgatgagaagttgaaaaagttcattgaga
gcagaaaactgaaagagcaagcaaagaaggctgcaaacatccaaaaatgcaacgaagtaa
aggaagctgtcatgtttccagccaag

BLASTn GenBank NR
Probe Info
Probe Sequence(5'-3') Probe X Probe Y Probe Interrogation
Position 		Strandedness
TCACCCCGGAGCTCAATATGGCAGT 106 625 20 Antisense
AGCACAATATCAAGGCACTCACCAT 229 77 134 Antisense
GGCACTCACCATGAAATATGTCAAC 577 535 147 Antisense
GAATTATTTCTCGCCTTGAAGCGGA 611 323 209 Antisense
GAACATCAGTCCAGAGTTGCTCCAA 524 351 235 Antisense
CAAGAAGTCCTGGATCTACATCCCC 569 185 266 Antisense
TCATCTTCTTCAAGTGAACTCTCAT 454 621 307 Antisense
AACTCTCATTTGATATGTTCTCGTC 446 141 323 Antisense
TTGCTCAAGCTTCACGGACCATGAA 271 701 395 Antisense
AAGCCACATCAGCAAGAGTCTCGTC 402 149 418 Antisense
GGAAGCTGTCATGTTTCCAGCCAAG 24 531 561 Antisense
Sequence Source Affymetrix Proprietary Database