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[183903_at]

Description F18A1.1 /REP_DB=WormBase Gene ID /WP=CE04401 /TR=Q19540 /GB=AAB63405.1 /SUBMIT=ST.LOUIS /CHR=2 /FEA=Sanger Annotation
Cluster 6grp_total > 53      4grp_total > 18      6grp_total_sub > Hat      

Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 67
1 2 3 4 range
A 5.8
(-2.7)
A 		23.7
(-1.1)
A 		2.5
(-3)
A 		68.7
(3)
A 		66
B 1.6
(-3)
A 		8.4
(-0.6)
A 		9.1
(-0.4)
A 		18.9
(3)
A 		17
C 8.9
(-2.6)
A 		15
(-2)
A 		4.8
(-3)
A 		66.1
(3)
P 		61
avr 5.4
(-3) 		15.7
(-1.7) 		5.5
(-3) 		51.2
(3) 		46

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 28
1 2 3 4 5 6 range
A 3.5
(-2.4)
A 		19.8
(1.4)
A 		26.4
(3)
A 		1
(-3)
A 		19.7
(1.4)
A 		15.4
(0.4)
A 		25
B 21.9
(1.1)
A 		6.2
(-3)
A 		28.9
(3)
A 		22.7
(1.4)
A 		17.1
(-0.1)
A 		10.7
(-1.8)
A 		23
C 3.1
(-3)
A 		27.6
(3)
P 		19.4
(1)
A 		10.4
(-1.2)
A 		20.6
(1.3)
A 		6.5
(-2.2)
A 		25
avr 9.5
(-3) 		17.9
(0.3) 		24.9
(3) 		11.4
(-2.3) 		19.1
(0.7) 		10.9
(-2.5) 		15
No Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 11
1 2 3 4 range
A 2.1
(-2.1)
A 		5.1
(-0.2)
A 		0.7
(-3)
A 		10.1
(3)
A 		9
B 0.5
(-3)
A 		2.1
(-0.3)
A 		2.1
(-0.3)
A 		4
(3)
A 		4
C 3
(-2.2)
A 		4.3
(-1.3)
A 		1.7
(-3)
A 		11.1
(3)
P 		9
avr 1.9
(-2.7) 		3.8
(-1) 		1.5
(-3) 		8.4
(3) 		7

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 8
1 2 3 4 5 6 range
A 0.6
(-2.6)
A 		7
(3)
A 		5.8
(1.9)
A 		0.2
(-3)
A 		5.9
(2)
A 		3.7
(0.1)
A 		7
B 7.6
(3)
A 		2.1
(-3)
A 		7
(2.3)
A 		6
(1.3)
A 		6.9
(2.2)
A 		4
(-0.9)
A 		6
C 1.2
(-3)
A 		8.4
(3)
P 		4.9
(0.1)
A 		2.1
(-2.3)
A 		6.7
(1.6)
A 		2.2
(-2.2)
A 		7
avr 3.1
(-2.5) 		5.8
(1.9) 		5.9
(2) 		2.8
(-3) 		6.5
(3) 		3.3
(-2.2) 		4
NetAffx Links Cluster Members
Consensus/Exemplar
GeneChip Array Information
Probe Set ID 183903_at
GeneChip Array C. elegans Genome Array
Organism Common Name Nematode
Probe Design Information
Transcript ID(Array Design) affy.Ce.5638
Sequence Type Exemplar sequence
Representative Public ID F18A1.1 NCBI
Target Description F18A1.1 /REP_DB=WormBase Gene ID /WP=CE04401 /TR=Q19540 /GB=AAB63405.1 /SUBMIT=ST.LOUIS /CHR=2 /FEA=Sanger Annotation
Annotation Method Description
Annotation Description This probe set was annotated using the Matching Probes based pipeline to a RefSeq identifier using 1 transcript(s).
Annotation Grade This is a grade A annotation.
Annotation Transcript Cluster (# of Matching Probes) NM_063211(11)
Transcript Assignments
Representative
Transcript		 Description Matching Probes Related Probesets by Grade
NM_063211 NCBI Caenorhabditis elegans F18A1.1 (F18A1.1) mRNA, complete cds. 11/11 None
SNAP00000013717 ENSEMBL cdna:SNAP chromosome:CEL140:II:7685279:7689606:1 11/11 None
GENEFINDER00000013721 ENSEMBL cdna:GeneFinder chromosome:CEL140:II:7685210:7689606:1 11/11 None
F18A1.1 ENSEMBL cdna:known chromosome:CEL140:II:7685210:7689606:1 gene:F18A1.1 11/11 None
Annotation Notes
There are no noteworthy cross hybridizing mRNAs found for this probe set.
Genomic Alignment of Consensus/Exemplar Sequence
Assembly Wormbase March 2004
Alignment(s)
Position Identity Coverage Cytoband
chrII:7685206-7689603(+) 100.0 100.0
Public Domain and Genome References
Gene Title
Ensembl F18A1.1
Entrez Gene 174241 Entrez gene
SwissProt Q19540 EMBL-EBI
WormBase CE04401 Wormbase
Functional Annotations
Protein Similarities
Method ID Description E-Value
blast AAB63405 Hypothetical protein F18A1.1 [Caenorhabditis elegans] ref|NP_495612.1| F18A1.1 [Caenorhabditis elegans] 0.0
blast CAE67514 Hypothetical protein CBG13033 [Caenorhabditis briggsae] 1.0E-110
Protein Domains
Trans Membrane
ID Number Of Domains Domain Boundaries
NP_495612.1 1 754-776
F18A1.1 1 754-776
SNAP00000013717 1 753-775
GENEFINDER00000013721 1 777-799
Sequence
Target Sequence 
>C. ELEGANS:183903_AT
gtgagttctcaggacaaagttggttgagaagaaaagagtcaagaaagaatgcaaaagaga
tgaatgaagatcaaggaaaatatgaaaaagaaggtcttccgattgcagtactgactggtt
taggagaaacaaaatggaaaggaagaacgaagaacatggcacttgaggcaagaaaagctg
atgaacgagaattggagtattttgaagcagttcataaagcgatcaaagaaataattgacg
atgcagaaggtgacgaagaagatcgaattctgatgattttggaaataatggagaaaagga
aaattattgagccgaacgaaattatcacggacacgaacaaattcgaagagcttctggttc
aactggaaaatcatttgagtgaacgtgaaaaggagaagtggattgcctgggctaaaagga
aacaacaattacgagagacggcgatcacgacatatggaaaaggaaaaagctttaacatct
acgataagccagttaatctagaagaagattatagactgaatgctggtgttgataactcgg
aaatgtttgtgaaagtgaaaatagaaacgatgaactggaggtcttcggat

BLASTn GenBank NR
Probe Info
Probe Sequence(5'-3') Probe X Probe Y Probe Interrogation
Position 		Strandedness
GTGAGTTCTCAGGACAAAGTTGGTT 122 483 2621 Antisense
AAGAAGGTCTTCCGATTGCAGTACT 545 151 2708 Antisense
GAACGAAGAACATGGCACTTGAGGC 322 347 2765 Antisense
GAAGCAGTTCATAAAGCGATCAAAG 615 341 2824 Antisense
GAACGAAATTATCACGGACACGAAC 635 347 2934 Antisense
TCGAAGAGCTTCTGGTTCAACTGGA 697 599 2963 Antisense
GGAGAAGTGGATTGCCTGGGCTAAA 147 517 3012 Antisense
GAGAGACGGCGATCACGACATATGG 424 395 3053 Antisense
ACATCTACGATAAGCCAGTTAATCT 709 105 3095 Antisense
GACTGAATGCTGGTGTTGATAACTC 293 375 3134 Antisense
AACGATGAACTGGAGGTCTTCGGAT 358 143 3186 Antisense
Sequence Source Affymetrix Proprietary Database