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[183902_at]

Description F43E2.5 /REP_DB=WormBase Gene ID /WP=CE07241 /TR=O02089 /GB=AAC71122.1 /SUBMIT=ST.LOUIS /CHR=2 /FEA=Sanger Annotation
Cluster 6grp_highest_10_10 > 06      6grp_high1_10_10 > 60      4grp_highest_8_8 > 18      4grp_high_8_8 > 62      6grp_highest_nonorm > 66      6grp_total > 60      4grp_total > 59      6grp_highest_sub > 04      6grp_high1_sub > 04      6grp_total_sub > Hat      4grp_rule_based > L3      

Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 1138
1 2 3 4 range
A 1892.6
(1.1)
P 		1844.7
(0.9)
P 		2243.7
(3)
P 		1105.6
(-3)
P 		1138
B 1563.9
(-0.5)
P 		1630.5
(-0.1)
P 		2184.8
(3)
P 		1124.8
(-3)
P 		1060
C 1625.7
(-0.4)
P 		2010.4
(2)
P 		2162.8
(3)
P 		1201.8
(-3)
P 		961
avr 1694.1
(0.1) 		1828.5
(0.9) 		2197.1
(3) 		1144.1
(-3) 		1053

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 1737
1 2 3 4 5 6 range
A 2162.7
(3)
P 		1325.2
(-1.3)
P 		1713.5
(0.7)
P 		2011.3
(2.2)
P 		1252.8
(-1.7)
P 		1000.4
(-3)
P 		1162
B 1692.2
(0.9)
P 		1444.9
(-0.6)
P 		1447.2
(-0.6)
P 		2047.9
(3)
P 		1084.9
(-2.8)
P 		1045.3
(-3)
P 		1003
C 1241.8
(-2)
P 		1359.4
(-1.6)
P 		1772.5
(-0.2)
P 		2698.7
(3)
P 		1184
(-2.2)
P 		961.3
(-3)
P 		1737
avr 1698.9
(0.3) 		1376.5
(-1.2) 		1644.4
(0.1) 		2252.6
(3) 		1173.9
(-2.2) 		1002.3
(-3) 		1250
No Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 592
1 2 3 4 range
A 689.1
(3)
P 		400.4
(-0.3)
P 		586.5
(1.8)
P 		161.8
(-3)
P 		527
B 498.7
(2.8)
P 		402.7
(0.7)
P 		506.3
(3)
P 		239.7
(-3)
P 		267
C 538.2
(0.7)
P 		578
(1.1)
P 		753.8
(3)
P 		202.6
(-3)
P 		551
avr 575.3
(2.4) 		460.4
(0.8) 		615.5
(3) 		201.4
(-3) 		414

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 345
1 2 3 4 5 6 range
A 398.7
(0.5)
P 		471.3
(2.1)
P 		373.2
(-0.1)
P 		510.1
(3)
P 		378
(0)
P 		243.6
(-3)
P 		267
B 588.8
(3)
P 		480.9
(0.3)
P 		351.4
(-3)
P 		542.4
(1.8)
P 		440.8
(-0.7)
P 		389.8
(-2)
P 		237
C 460.3
(0.8)
P 		414.8
(-0.5)
P 		451.1
(0.5)
P 		542.7
(3)
P 		383.1
(-1.3)
P 		321.8
(-3)
P 		221
avr 482.6
(1.6) 		455.7
(0.9) 		391.9
(-0.9) 		531.7
(3) 		400.6
(-0.7) 		318.4
(-3) 		213
NetAffx Links Cluster Members
Consensus/Exemplar
GeneChip Array Information
Probe Set ID 183902_at
GeneChip Array C. elegans Genome Array
Organism Common Name Nematode
Probe Design Information
Transcript ID(Array Design) affy.Ce.4905
Sequence Type Exemplar sequence
Representative Public ID F43E2.5 NCBI
Target Description F43E2.5 /REP_DB=WormBase Gene ID /WP=CE07241 /TR=O02089 /GB=AAC71122.1 /SUBMIT=ST.LOUIS /CHR=2 /FEA=Sanger Annotation
Annotation Method Description
Annotation Description This probe set was annotated using the Matching Probes based pipeline to a RefSeq identifier using 1 transcript(s).
Annotation Grade This is a grade A annotation.
Annotation Transcript Cluster (# of Matching Probes) NM_063139(11)
Transcript Assignments
Representative
Transcript		 Description Matching Probes Related Probesets by Grade
NM_063139 NCBI Caenorhabditis elegans F43E2.5 (F43E2.5) mRNA, complete cds. 11/11 None
SNAP00000044491 ENSEMBL cdna:SNAP chromosome:CEL140:II:7360598:7363962:-1 11/11 None
GENEFINDER00000044504 ENSEMBL cdna:GeneFinder chromosome:CEL140:II:7363206:7363962:-1 11/11 None
F43E2.5 ENSEMBL cdna:known chromosome:CEL140:II:7363145:7363969:-1 gene:F43E2.5 11/11 None
Annotation Notes
There are no noteworthy cross hybridizing mRNAs found for this probe set.
Genomic Alignment of Consensus/Exemplar Sequence
Assembly Wormbase March 2004
Alignment(s)
Position Identity Coverage Cytoband
chrII:7363202-7363959(-) 100.0 100.0
Public Domain and Genome References
Gene Title
Ensembl F43E2.5
Entrez Gene 185709 Entrez gene
SwissProt O02089 EMBL-EBI
WormBase CE07241 Wormbase
Functional Annotations
Ortholog
ID Title Organism
ATGENOME1:15484_AT peptide methionine sulfoxide reductase family protein at
ATH1-121501:265804_AT peptide methionine sulfoxide reductase family protein at
DROSOPHILA_2:1625276_A_AT Ecdysone-induced protein 28/29kD dm
DROSGENOME1:143147_AT Ecdysone-induced protein 28/29kD dm
Gene Ontology
GO Biological Process (view graph)
ID Description Evidence Links
6464 protein modification inferred from electronic annotation QuickGO AmiGO
GO Molecular Function (view graph)
ID Description Evidence Links
8113 protein-methionine-S-oxide reductase activity inferred from electronic annotation QuickGO AmiGO
Protein Similarities
Method ID Description E-Value
blast AAC71122 Hypothetical protein F43E2.5 [Caenorhabditis elegans] ref|NP_495540.1| F43E2.5 [Caenorhabditis elegans] 1.0E-121
blast AAC71122 Hypothetical protein F43E2.5 [Caenorhabditis elegans] ref|NP_495540.1| F43E2.5 [Caenorhabditis elegans] 1.0E-118
blast CAE67603 Hypothetical protein CBG13148 [Caenorhabditis briggsae] 1.0E-106
blast CAE67603 Hypothetical protein CBG13148 [Caenorhabditis briggsae] 1.0E-104
blast AAP93586 methionine sulfoxide reductase [Apis mellifera ligustica] ref|XP_392623.1| PREDICTED: similar to methionine sulfoxide reductase [Apis mellifera] 3.0E-33
Protein Domains
Database ID Description E-Value
Pfam IPR002569 EMBL-EBI Peptide methionine sulfoxide reductase 1.4E-78
Sequence
Target Sequence 
>C. ELEGANS:183902_AT
tggagcgtgcctattttggtcttcagtgcttctggggagaatctgcatgggcgaagctga
aaggagttgtggtgacacgagttggatatgctggaggaaaacaaccaaatcctacttata
agaatatcaaggatcatactgaaatcacagagatcacttttgatccaaaagttattgaat
actcaaagctcaccaacttcttttggaagcatcacaacccagctgaaaggagaaagaagc
aataccaatctgcgattctctacgtaaatgacgaccaaaagaaagtcgctgaagaaactt
tgaaagtagcaaaggacaagcatggagacattgaaacatatattgagccattggacaagt
tctatcaagctgaagattaccatcaaaaatattggttccgtcaaaagaagattcttttcg
atgaactgtctcttcttgatactcaagttgctgaaggagaacttgccacaaaattgaacg
catattgtgctggcttccaggacttccacgatcttgagcgtcttgca

BLASTn GenBank NR
Probe Info
Probe Sequence(5'-3') Probe X Probe Y Probe Interrogation
Position 		Strandedness
TGGAGCGTGCCTATTTTGGTCTTCA 268 549 23 Antisense
TTGGTCTTCAGTGCTTCTGGGGAGA 279 709 38 Antisense
GGGAGAATCTGCATGGGCGAAGCTG 332 493 57 Antisense
GGTGACACGAGTTGGATATGCTGGA 708 499 93 Antisense
GAATACTCAAAGCTCACCAACTTCT 678 325 199 Antisense
TTGGAAGCATCACAACCCAGCTGAA 198 709 225 Antisense
CCAATCTGCGATTCTCTACGTAAAT 527 277 267 Antisense
GAGCCATTGGACAAGTTCTATCAAG 422 385 367 Antisense
CGATGAACTGTCTCTTCTTGATACT 543 249 441 Antisense
TATTGTGCTGGCTTCCAGGACTTCC 700 657 505 Antisense
CTTCCACGATCTTGAGCGTCTTGCA 45 219 525 Antisense
Sequence Source Affymetrix Proprietary Database