[Home] | [Total List]

[183901_s_at]

Description F09E5.9 /REP_DB=WormBase Gene ID /WP=CE02616 /TR=Q19255 /GB=AAA79349.1 /SUBMIT=ST.LOUIS /CHR=2 /FEA=Sanger Annotation
Cluster 6grp_total > 94      4grp_total > 03      6grp_total_sub > Hat      

Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 125
1 2 3 4 range
A 7.4
(-2.1)
A 		10.7
(-1.3)
A 		3.5
(-3)
A 		28.8
(3)
A 		25
B 6.4
(3)
A 		2.8
(-3)
A 		5.7
(1.8)
A 		4.8
(0.3)
A 		4
C 15.5
(-2.4)
A 		3.5
(-2.9)
A 		2.4
(-3)
A 		127.6
(3)
A 		125
avr 9.8
(-2.3) 		5.7
(-2.8) 		3.9
(-3) 		53.7
(3) 		50

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 53
1 2 3 4 5 6 range
A 5.6
(-2.8)
A 		9.5
(-2.3)
A 		32.6
(0.3)
A 		3.5
(-3)
A 		55.7
(3)
A 		5.4
(-2.8)
A 		52
B 3
(-2.5)
A 		2.4
(-3)
A 		4.7
(-1.1)
A 		4.4
(-1.3)
A 		8.1
(1.8)
A 		9.6
(3)
A 		7
C 2.4
(-3)
A 		23.5
(1.9)
A 		4.1
(-2.6)
A 		9.2
(-1.4)
A 		8.4
(-1.6)
A 		28.5
(3)
A 		26
avr 3.7
(-3) 		11.8
(-0.6) 		13.8
(-0) 		5.7
(-2.4) 		24.1
(3) 		14.5
(0.2) 		20
No Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 21
1 2 3 4 range
A 2.7
(0.3)
A 		2.3
(-0.5)
A 		0.9
(-3)
A 		4.2
(3)
A 		3
B 2.1
(3)
A 		0.7
(-3)
A 		1.3
(-0.4)
A 		1
(-1.7)
A 		1
C 5.1
(-1.8)
A 		1
(-2.9)
A 		0.8
(-3)
A 		21.5
(3)
A 		21
avr 3.3
(-1.3) 		1.3
(-2.8) 		1
(-3) 		8.9
(3) 		8

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 16
1 2 3 4 5 6 range
A 1
(-3)
A 		3.4
(-2.1)
A 		7.1
(-0.7)
A 		0.9
(-3)
A 		16.8
(3)
A 		1.3
(-2.8)
A 		16
B 1
(-2.6)
A 		0.8
(-3)
A 		1.2
(-2.1)
A 		1.2
(-2.1)
A 		3.3
(2.4)
A 		3.6
(3)
A 		3
C 0.9
(-3)
A 		7.2
(1.4)
A 		1
(-2.9)
A 		1.9
(-2.3)
A 		2.7
(-1.7)
A 		9.5
(3)
A 		9
avr 1
(-3) 		3.8
(-0.5) 		3.1
(-1.1) 		1.3
(-2.7) 		7.6
(3) 		4.8
(0.5) 		7
NetAffx Links Cluster Members
Consensus/Exemplar
Group Members
GeneChip Array Information
Probe Set ID 183901_s_at
GeneChip Array C. elegans Genome Array
Organism Common Name Nematode
Probe Design Information
Transcript ID(Array Design) affy.Ce.5242
Sequence Type Exemplar sequence
Representative Public ID F09E5.9 NCBI
Target Description F09E5.9 /REP_DB=WormBase Gene ID /WP=CE02616 /TR=Q19255 /GB=AAA79349.1 /SUBMIT=ST.LOUIS /CHR=2 /FEA=Sanger Annotation
Annotation Method Description
Annotation Description This probe set was annotated using the Matching Probes based pipeline to a RefSeq identifier using 1 transcript(s).
Annotation Grade This is a grade A annotation.
Annotation Transcript Cluster (# of Matching Probes) NM_062598(11), NM_062599(11)
Transcript Assignments
Representative
Transcript		 Description Matching Probes Related Probesets by Grade
NM_062598 NCBI Caenorhabditis elegans F09E5.9 (F09E5.9) mRNA, complete cds. 11/11 None
NM_062599 NCBI Caenorhabditis elegans F09E5.10 (F09E5.10) mRNA, complete cds. 11/11 A 
GENEFINDER00000010017 ENSEMBL cdna:GeneFinder chromosome:CEL140:I:13485500:13497045:-1 10/11 None
GENEFINDER00000044028 ENSEMBL cdna:GeneFinder chromosome:CEL140:II:5347719:5350516:-1 11/11 None
GENEFINDER00000044036 ENSEMBL cdna:GeneFinder chromosome:CEL140:II:5346577:5347378:1 11/11 None
F09E5.9 ENSEMBL cdna:known chromosome:CEL140:II:5346577:5347378:1 gene:F09E5.9 11/11 None
F09E5.10 ENSEMBL cdna:known chromosome:CEL140:II:5348066:5350516:-1 gene:F09E5.10 11/11 A 
Annotation Notes
Cross Hybridizing mRNA Matched Probes Nature of Assignment Related Probesets by Grade
NM_001027477 2/11 Cross Hyb Matching Probes None
NM_067338 2/11 Cross Hyb Matching Probes A 
GENEFINDER00000004345 2/11 Cross Hyb Matching Probes None
SNAP00000044009 3/11 Cross Hyb Matching Probes None
GENEFINDER00000007808 2/11 Cross Hyb Matching Probes None
K01A11.5 2/11 Cross Hyb Matching Probes A 
Y43F4B.2 2/11 Cross Hyb Matching Probes A 
Genomic Alignment of Consensus/Exemplar Sequence
Assembly Wormbase March 2004
Public Domain and Genome References
Gene Title

Ensembl F09E5.9
F09E5.10
Entrez Gene 173905 Entrez gene
184241 Entrez gene
SwissProt Q19256 EMBL-EBI
Q19255 EMBL-EBI
WormBase CE02605 Wormbase
CE02616 Wormbase
Functional Annotations
Protein Similarities
Method ID Description E-Value
blast AAA79350 Hypothetical protein F09E5.10 [Caenorhabditis elegans] ref|NP_495000.1| F09E5.10 [Caenorhabditis elegans] 0.0
blast NP_490918 Y20F4.4 [Caenorhabditis elegans] gb|AAL00866.2| Hypothetical protein Y20F4.4 [Caenorhabditis elegans] 0.0
blast CAH10807 Hypothetical protein K01A11.5 [Caenorhabditis elegans] ref|NP_001022648.1| K01A11.5 [Caenorhabditis elegans] 0.0
blast CAB63371 Hypothetical protein Y48G10A.2 [Caenorhabditis elegans] ref|NP_493370.1| Y48G10A.2 [Caenorhabditis elegans] 0.0
Sequence
Target Sequence 
>C. ELEGANS:183901_S_AT
aatgcgccgcacggctttttgcaatgcgccgcacgcttcttcaattttcgatgacaaaaa
cgggtttcattcgatttcgaatcgatcaaaattaatattaatcgaaaatgagcgtttcct
tcccggaaaaaagaagaacttgatgctgagagtgatccaagcggagccaaacgctttttt
agaggcaacgttcgacagggatctaaagaagaaaagaaatccgaaagcgtctactacaaa
tgtatgtgaatcgactcctgcaacaatcgatctggttactccacctgcatcaccacgtcg
gtctgattcgtatatgcagtttccttcaaattctcgagagctcgatgagccgagatccac
tgacgatatcccggaatgcgattcaatagccaattctactcaggaaacaagcttggatac
aacagattccatggcaaatactgaaagattttttgatttttatccagctgtatttcgccg
cacagtccttcgcaatgcgccgcacggctttttgcaatgcgccgcac

BLASTn GenBank NR
Probe Info
Probe Sequence(5'-3') Probe X Probe Y Probe Interrogation
Position 		Strandedness
AATGCGCCGCACGGCTTTTTGCAAT 217 167 57 Antisense
GCACGGCTTTTTGCAATGCGCCGCA 473 299 65 Antisense
GCACGCTTCTTCAATTTTCGATGAC 387 315 87 Antisense
GATGACAAAAACGGGTTTCATTCGA 490 405 106 Antisense
TCGAAAATGAGCGTTTCCTTCCCGG 72 599 158 Antisense
AGAACTTGATGCTGAGAGTGATCCA 469 73 191 Antisense
GAGTGATCCAAGCGGAGCCAAACGC 270 401 206 Antisense
GCGGAGCCAAACGCTTTTTTAGAGG 143 241 217 Antisense
TTAGAGGCAACGTTCGACAGGGATC 196 653 235 Antisense
CCGCACGGCTTTTTGCAATGCGCCG 384 257 556 Antisense
CACGGCTTTTTGCAATGCGCCGCAC 609 197 559 Antisense
Sequence Source Affymetrix Proprietary Database