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[183899_at]

Description C06A5.2 /REP_DB=WormBase Gene ID /WP=CE07949 /TR=O01480 /GB=AAB52436.1 /SUBMIT=ST.LOUIS /CHR=1 /FEA=Sanger Annotation
Cluster 6grp_total > 97      4grp_total > 32      6grp_total_sub > Increase      6grp_rule_based > S6      

Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 55
1 2 3 4 range
A 13.8
(-2.2)
A 		6.9
(-3)
A 		57
(3)
A 		25.7
(-0.7)
A 		50
B 18.9
(3)
A 		2.1
(-3)
A 		3.3
(-2.6)
A 		3.4
(-2.5)
A 		17
C 6.2
(-3)
A 		27.6
(1.8)
A 		8
(-2.6)
A 		33
(3)
A 		27
avr 13
(-2.5) 		12.2
(-3) 		22.8
(3) 		20.7
(1.8) 		11

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 59
1 2 3 4 5 6 range
A 2.9
(-2.9)
A 		8.1
(-2.4)
A 		2.1
(-3)
A 		8.4
(-2.4)
A 		53.8
(2.3)
A 		60.7
(3)
A 		59
B 3.6
(-2.9)
A 		23.9
(-0.7)
A 		3
(-3)
A 		4.1
(-2.9)
A 		13.4
(-1.8)
A 		57
(3)
A 		54
C 5.2
(-3)
A 		8.3
(-2.6)
A 		31.5
(0.3)
A 		48.5
(2.5)
A 		52.7
(3)
M 		48.6
(2.5)
A 		48
avr 3.9
(-3) 		13.4
(-1.9) 		12.2
(-2) 		20.3
(-1.1) 		40
(1.2) 		55.4
(3) 		52
No Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 14
1 2 3 4 range
A 5
(-1.4)
A 		1.5
(-3)
A 		14.9
(3)
A 		3.8
(-2)
A 		13
B 6
(3)
A 		0.5
(-3)
A 		0.8
(-2.7)
A 		0.7
(-2.8)
A 		6
C 2.1
(-3)
A 		7.9
(3)
A 		2.8
(-2.3)
A 		5.6
(0.6)
A 		6
avr 4.4
(-0.7) 		3.3
(-3) 		6.2
(3) 		3.4
(-2.8) 		3

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 21
1 2 3 4 5 6 range
A 0.5
(-3)
A 		2.9
(-2.1)
A 		0.5
(-3)
A 		2.1
(-2.4)
A 		16.2
(3)
A 		14.8
(2.5)
A 		16
B 1.3
(-2.8)
A 		8
(-0.9)
A 		0.7
(-3)
A 		1.1
(-2.9)
A 		5.4
(-1.6)
A 		21.3
(3)
A 		21
C 1.9
(-3)
A 		2.5
(-2.8)
A 		8
(-0.6)
A 		9.7
(0.1)
A 		17.1
(3)
M 		16.3
(2.7)
A 		15
avr 1.2
(-3) 		4.5
(-1.8) 		3.1
(-2.3) 		4.3
(-1.9) 		12.9
(1.3) 		17.5
(3) 		16
NetAffx Links Cluster Members
Consensus/Exemplar
GeneChip Array Information
Probe Set ID 183899_at
GeneChip Array C. elegans Genome Array
Organism Common Name Nematode
Probe Design Information
Transcript ID(Array Design) affy.Ce.898
Sequence Type Exemplar sequence
Representative Public ID C06A5.2 NCBI
Target Description C06A5.2 /REP_DB=WormBase Gene ID /WP=CE07949 /TR=O01480 /GB=AAB52436.1 /SUBMIT=ST.LOUIS /CHR=1 /FEA=Sanger Annotation
Annotation Method Description
Annotation Description This probe set was annotated using the Matching Probes based pipeline to a RefSeq identifier using 1 transcript(s).
Annotation Grade This is a grade A annotation.
Annotation Transcript Cluster (# of Matching Probes) NM_059335(11)
Transcript Assignments
Representative
Transcript		 Description Matching Probes Related Probesets by Grade
NM_059335 NCBI Caenorhabditis elegans C06A5.2 (C06A5.2) mRNA, complete cds. 11/11 None
SNAP00000012791 ENSEMBL cdna:SNAP chromosome:CEL140:I:6014502:6015430:1 11/11 None
GENEFINDER00000012797 ENSEMBL cdna:GeneFinder chromosome:CEL140:I:6014502:6015430:1 11/11 None
C06A5.2 ENSEMBL cdna:known chromosome:CEL140:I:6014502:6015430:1 gene:C06A5.2 11/11 None
Annotation Notes
There are no noteworthy cross hybridizing mRNAs found for this probe set.
Genomic Alignment of Consensus/Exemplar Sequence
Assembly Wormbase March 2004
Alignment(s)
Position Identity Coverage Cytoband
chrI:6014501-6015430(+) 100.0 100.0
Public Domain and Genome References
Gene Title
Ensembl C06A5.2
Entrez Gene 182281 Entrez gene
SwissProt O01480 EMBL-EBI
WormBase CE07949 Wormbase
Functional Annotations
Protein Similarities
Method ID Description E-Value
blast AAB52436 Hypothetical protein C06A5.2 [Caenorhabditis elegans] ref|NP_491736.1| C06A5.2 [Caenorhabditis elegans] 3.0E-73
blast CAE60110 Hypothetical protein CBG03647 [Caenorhabditis briggsae] 3.0E-36
Sequence
Target Sequence 
>C. ELEGANS:183899_AT
ccggagccgatctccaaggattcggccgacaaaaagaagaagacgactataaagaagggg
aagaagtttccgatgatgaacatgattgtgaagaacaagaagaatgaggtgcaagttgag
aagaaaccggaagaggttccagagcagaacaaatcagtcaaagatcaaacaaagaaagaa
gaagtgaaggtcgttgaggaggataaggttgagaagaaagtggaacagaagaaaccgatt
atcaatcggccaaattgtgttgccatcaaccctcgtagtgctacatctggaaagaagaat
aagtacaagttcaagtacggacaaattgatcagcaagagttatcgattaacaatgacaaa
accgagtatttggagaatgctcagttgacaaagttgatgtctcatgctgatgtgagagca
ttgatgggtgggcagtttgcacaaggagaaaatgcggataccaataattgtcaggataca
gtcgaagaagtggacagtgagatgctcgaaattgcattctcacccctacttgccgtaatc
ccacgcgaagatgaaagagtctacggagctttcgtgcatc

BLASTn GenBank NR
Probe Info
Probe Sequence(5'-3') Probe X Probe Y Probe Interrogation
Position 		Strandedness
CCGGAGCCGATCTCCAAGGATTCGG 420 265 46 Antisense
ATCTCCAAGGATTCGGCCGACAAAA 455 33 55 Antisense
GAAACCGGAAGAGGTTCCAGAGCAG 308 359 168 Antisense
CAATCGGCCAAATTGTGTTGCCATC 81 183 288 Antisense
CAAATTGTGTTGCCATCAACCCTCG 653 193 296 Antisense
TCAACCCTCGTAGTGCTACATCTGG 543 631 311 Antisense
AAAGTTGATGTCTCATGCTGATGTG 3 123 435 Antisense
GTGAGAGCATTGATGGGTGGGCAGT 486 483 457 Antisense
GGGTGGGCAGTTTGCACAAGGAGAA 447 493 471 Antisense
AGAAGTGGACAGTGAGATGCTCGAA 229 75 531 Antisense
AGAGTCTACGGAGCTTTCGTGCATC 29 67 601 Antisense
Sequence Source Affymetrix Proprietary Database