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[183897_s_at]

Description C33H5.9 /REP_DB=WormBase Gene ID /WP=CE04152 /TR=Q18406 /GB=AAA82266.1 /SUBMIT=ST.LOUIS /CHR=4 /FEA=Sanger Annotation
Cluster 6grp_highest_10_10 > 16      6grp_high1_10_10 > 50      4grp_highest_8_8 > 56      4grp_high_8_8 > 42      6grp_highest_nonorm > 66      6grp_total > 60      4grp_total > 45      6grp_highest_sub > 03_04      6grp_high1_sub > 03_04      6grp_total_sub > Hat      4grp_rule_based > L1      

Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 441
1 2 3 4 range
A 1235.8
(3)
P 		1014.5
(-0.6)
P 		864.7
(-3)
P 		880.5
(-2.7)
P 		371
B 950.3
(-0.1)
P 		1061.1
(3)
P 		849.6
(-3)
P 		860.1
(-2.7)
P 		212
C 1212.3
(3)
P 		1080.4
(1.1)
P 		966.8
(-0.5)
P 		795
(-3)
P 		417
avr 1132.8
(3) 		1052
(1.3) 		893.7
(-2) 		845.2
(-3) 		288

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 933
1 2 3 4 5 6 range
A 1456
(2.9)
P 		1163.5
(-1.2)
P 		1462.5
(3)
P 		1461.9
(3)
P 		1151.2
(-1.4)
P 		1038.4
(-3)
P 		424
B 1363.3
(-0.3)
P 		1124.1
(-3)
P 		1654.1
(3)
P 		1540
(1.7)
P 		1217.7
(-1.9)
P 		1174.9
(-2.4)
P 		530
C 1020.5
(-2.1)
P 		1230.5
(-0.7)
P 		1296.3
(-0.3)
P 		1813
(3)
P 		880.1
(-3)
P 		1053.2
(-1.9)
P 		933
avr 1279.9
(-0.7) 		1172.7
(-2) 		1471
(1.5) 		1605
(3) 		1083
(-3) 		1088.8
(-2.9) 		522
No Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 321
1 2 3 4 range
A 450
(3)
P 		220.2
(-1.3)
P 		226.1
(-1.2)
P 		128.9
(-3)
P 		321
B 303
(3)
P 		262.1
(0.9)
P 		196.9
(-2.3)
P 		183.3
(-3)
P 		120
C 401.3
(3)
P 		310.6
(1)
P 		337
(1.6)
P 		134.1
(-3)
P 		267
avr 384.8
(3) 		264.3
(-0.1) 		253.3
(-0.3) 		148.8
(-3) 		236

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 242
1 2 3 4 5 6 range
A 268.4
(-2.4)
P 		413.8
(3)
P 		318.5
(-0.6)
P 		370.8
(1.4)
P 		347.4
(0.5)
P 		252.8
(-3)
P 		161
B 474.4
(2)
P 		374.2
(-3)
P 		401.7
(-1.6)
P 		407.9
(-1.3)
P 		494.7
(3)
P 		438.1
(0.2)
P 		121
C 378.3
(3)
P 		375.4
(2.8)
P 		329.9
(-0.1)
P 		364.6
(2.1)
P 		284.8
(-3)
P 		352.6
(1.4)
P 		94
avr 373.7
(0.9) 		387.8
(3) 		350
(-2.7) 		381.1
(2) 		375.6
(1.2) 		347.8
(-3) 		40
NetAffx Links Cluster Members
Consensus/Exemplar
Group Members
GeneChip Array Information
Probe Set ID 183897_s_at
GeneChip Array C. elegans Genome Array
Organism Common Name Nematode
Probe Design Information
Transcript ID(Array Design) affy.Ce.8594
Sequence Type Exemplar sequence
Representative Public ID C33H5.9 NCBI
Target Description C33H5.9 /REP_DB=WormBase Gene ID /WP=CE04152 /TR=Q18406 /GB=AAA82266.1 /SUBMIT=ST.LOUIS /CHR=4 /FEA=Sanger Annotation
Annotation Method Description
Annotation Description This probe set was annotated using the Matching Probes based pipeline to a RefSeq identifier using 1 transcript(s).
Annotation Grade This is a grade A annotation.
Annotation Transcript Cluster (# of Matching Probes) NM_068882(11)
Transcript Assignments
Representative
Transcript		 Description Matching Probes Related Probesets by Grade
NM_068882 NCBI Caenorhabditis elegans C33H5.9 (C33H5.9) mRNA, complete cds. 11/11 None
SNAP00000004477 ENSEMBL cdna:SNAP chromosome:CEL140:IV:7779535:7782482:-1 11/11 None
GENEFINDER00000004506 ENSEMBL cdna:GeneFinder chromosome:CEL140:IV:7779535:7782482:-1 11/11 None
C33H5.9 ENSEMBL cdna:known chromosome:CEL140:IV:7779374:7782482:-1 gene:C33H5.9 11/11 None
Annotation Notes
There are no noteworthy cross hybridizing mRNAs found for this probe set.
Genomic Alignment of Consensus/Exemplar Sequence
Assembly Wormbase March 2004
Alignment(s)
Position Identity Coverage Cytoband
chrIV:7779540-7782353(-) 100.0 100.0
Public Domain and Genome References
Gene Title
Ensembl C33H5.9
Entrez Gene 177562 Entrez gene
SwissProt Q18406 EMBL-EBI
WormBase CE04152 Wormbase
Functional Annotations
Ortholog
ID Title Organism
ATH1-121501:245211_AT exocyst complex component Sec10-related at
CANINE_2:CFA.18664.1.S1_S_AT similar to Exocyst complex component Sec10 (hSec10) cfa
CANINE_2:CFAAFFX.23428.1.S1_S_AT similar to Exocyst complex component Sec10 (hSec10) cfa
DROSOPHILA_2:1623235_AT dm
DROSGENOME1:152753_AT dm
CHICKEN:GGA.3148.1.S1_AT SEC10-like 1 (S. cerevisiae) gga
CHICKEN:GGAAFFX.7677.2.S1_AT SEC10-like 1 (S. cerevisiae) gga
CHICKEN:GGAAFFX.7677.2.S1_S_AT SEC10-like 1 (S. cerevisiae) gga
HG-U133_PLUS_2:218748_S_AT SEC10-like 1 (S. cerevisiae) hs
HG-U133A:218748_S_AT SEC10-like 1 (S. cerevisiae) hs
HG-FOCUS:218748_S_AT SEC10-like 1 (S. cerevisiae) hs
HG-U133A_2:218748_S_AT SEC10-like 1 (S. cerevisiae) hs
HU35KSUBA:RC_AA126426_S_AT SEC10-like 1 (S. cerevisiae) hs
HU35KSUBA:AA436202_AT SEC10-like 1 (S. cerevisiae) hs
HU35KSUBD:RC_R66391_F_AT SEC10-like 1 (S. cerevisiae) hs
HUGENEFL:U85946_AT SEC10-like 1 (S. cerevisiae) hs
U133_X3P:G5730036_3P_A_AT SEC10-like 1 (S. cerevisiae) hs
U133_X3P:HS.29494.2.S1_3P_X_AT SEC10-like 1 (S. cerevisiae) hs
U133_X3P:HS.29494.2.S1_3P_AT SEC10-like 1 (S. cerevisiae) hs
U133_X3P:HS.29494.1.S1_3P_AT SEC10-like 1 (S. cerevisiae) hs
U133_X3P:HS.279947.0.S2_3P_X_AT SEC10-like 1 (S. cerevisiae) hs
U133_X3P:HS.279947.0.S2_3P_S_AT SEC10-like 1 (S. cerevisiae) hs
U133_X3P:HS.279947.0.S2_3P_AT SEC10-like 1 (S. cerevisiae) hs
U133_X3P:222726_3P_S_AT SEC10-like 1 (S. cerevisiae) hs
HG-U133_PLUS_2:222726_S_AT SEC10-like 1 (S. cerevisiae) hs
HG-U133B:222726_S_AT SEC10-like 1 (S. cerevisiae) hs
HG-U133_PLUS_2:225084_AT SEC10-like 1 (S. cerevisiae) hs
HG-U133B:225084_AT SEC10-like 1 (S. cerevisiae) hs
HG-U133_PLUS_2:228418_AT SEC10-like 1 (S. cerevisiae) hs
HG-U133B:228418_AT SEC10-like 1 (S. cerevisiae) hs
HG-U95B:45744_AT SEC10-like 1 (S. cerevisiae) hs
HG-U95C:57159_AT SEC10-like 1 (S. cerevisiae) hs
HG-U95E:88639_AT SEC10-like 1 (S. cerevisiae) hs
HG-U95E:85164_AT SEC10-like 1 (S. cerevisiae) hs
HU35KSUBD:RC_AA521473_AT SEC10-like 1 (S. cerevisiae) hs
MOE430B:1438126_AT SEC10-like 1 (S. cerevisiae) mm
MOUSE430_2:1438126_AT SEC10-like 1 (S. cerevisiae) mm
MG-U74BV2:109601_AT SEC10-like 1 (S. cerevisiae) mm
MG-U74CV2:166210_I_AT SEC10-like 1 (S. cerevisiae) (Sec10l1), mRNA mm
MU19KSUBC:TC41872_AT SEC10-like 1 (S. cerevisiae) (Sec10l1), mRNA mm
RG-U34A:U79417_AT SEC10-like 1 (S. cerevisiae) rn
RAE230A:1387841_AT SEC10-like 1 (S. cerevisiae) rn
RAT230_2:1387841_AT SEC10-like 1 (S. cerevisiae) rn
RAE230B:1395155_AT SEC10-like 1 (S. cerevisiae) rn
RAT230_2:1395155_AT SEC10-like 1 (S. cerevisiae) rn
RG-U34B:RC_AI030630_AT SEC10-like 1 (S. cerevisiae) rn
YEAST_2:1770739_AT Essential 100kDa subunit of the exocyst complex (Sec3p, Sec5p, Sec6p, Sec8p, Sec10p, Sec15p, Exo70p, and Exo84p), which has the essential function of mediating polarized targeting of secretory vesicles to active sites of exocytosis Sc
Protein Similarities
Method ID Description E-Value
blast AAA82266 Hypothetical protein C33H5.9 [Caenorhabditis elegans] ref|NP_501283.1| C33H5.9 [Caenorhabditis elegans] sp|Q18406|SEC10_CAEEL Probable exocyst complex component Sec10 0.0
blast CAE70881 Hypothetical protein CBG17671 [Caenorhabditis briggsae] 0.0
blast XP_624953 PREDICTED: similar to ENSANGP00000011291 [Apis mellifera] 1.0E-138
Protein Domains
Database ID Description E-Value
Pfam IPR009976 EMBL-EBI Exocyst complex component Sec10 1.0E-126
Pfam IPR009976 EMBL-EBI Exocyst complex component Sec10 1.0E-126
Sequence
Target Sequence 
>C. ELEGANS:183897_S_AT
tgaagatcccattttccctattatcaaagaaacaattgtcgaaccatctgttgccaagaa
atggcaacaatctctgcgttctttggaatcaaaaatgagtttaggattggaacggcaatt
gaattcaatcgtaggatacgtgaaattcttgttcagcgaacaaaagaaaactgatttccg
tccggattctcagcaaattgatattcgagtatccccacaatgtcaattggcatctcgttt
tcttgcaaaccaagttgctgcaatggagttgggatgtgatggcgaaaatttggaagcact
tcaatctgatcttgcaactcggctattcaaattcatgcttacacatattcaacagttcac
atataattctactggtgctgtacttcttctttgtgatgttggagaacttcgaactcttgt
atcaaaatggagagttcaaaatgcactgacacaatgggaaagtcttcaagctcttaccaa
tttgctcgccgttcttcccgatcaagttaatgaaacagctcactcctcgttgctcgaaaa
tgttgatagacaattgattcatgattttgttcgacttcga

BLASTn GenBank NR
Probe Info
Probe Sequence(5'-3') Probe X Probe Y Probe Interrogation
Position 		Strandedness
TGAAGATCCCATTTTCCCTATTATC 120 575 1377 Antisense
AATTGTCGAACCATCTGTTGCCAAG 294 177 1410 Antisense
AATGGCAACAATCTCTGCGTTCTTT 545 161 1436 Antisense
ACTGATTTCCGTCCGGATTCTCAGC 623 97 1546 Antisense
TTCGAGTATCCCCACAATGTCAATT 162 691 1580 Antisense
TGGCATCTCGTTTTCTTGCAAACCA 626 541 1604 Antisense
ATCTGATCTTGCAACTCGGCTATTC 576 33 1680 Antisense
AATTCTACTGGTGCTGTACTTCTTC 350 177 1741 Antisense
TCAAGCTCTTACCAATTTGCTCGCC 56 633 1842 Antisense
TTAATGAAACAGCTCACTCCTCGTT 611 681 1883 Antisense
GATTCATGATTTTGTTCGACTTCGA 227 431 1932 Antisense
Sequence Source Affymetrix Proprietary Database